Weed infestation of a cereal-legume mixture depending on its concentration and position in a crop rotation

A field study was carried out in the period 2000-2006 at the Experimental Station in Tomaszkowo belonging to the University of Warmia and Mazury in Olsztyn. Its aim was to compare weed infestation of a mixture of spring barley and field pea grown in a four crop rotation with different crop selection and sequence. Each year during tillering of spring barley and before the harvest of the mixture, weed species composition and density were evaluated, while additionally weed biomass was also estimated before the harvest. These results were used to determine species constancy, Simpson’s dominance index, the Shannon-Wiener diversity and evenness indices as well as the community similarity index based on floristic richness, numbers and biomass of particular weed species. The cropping frequency and the position of the mixture in the crop rotation did not differentiate the species composition and total biomass of weed communities in the cereal-legume mixture crops. The crop rotation in which the mixture constituted 50% and was grown after itself had a reducing effect on weed numbers. Growing field pea in the 4-year crop rotation promoted weed infestation of the mixture and the dominance of weed communities. Capsella bursa-pastoris, Chenopodium album, Echinochloa crus-galli, Elymus repens, Polygonum convolvulus, and Sonchus arvensis were constant components of the agrophytocenoses. The weed communities were more similar in terms of their floristic composition than in terms of weed density and air-dry weight of weeds

Influence of crop rotation and meteorological conditons on density and biomass of weeds in spring barley (Hordeum vulgare L.)

The paper presents the analysis of changes in weed infestation in spring barley cultivated in the years 1990-2004 in crop rotation with a 25% proportion of this cereal (potato - spring barley - sowing peas - winter triticale), when it was grown after potato, and in crop rotation with its 75% proportion (potato - spring barley - spring barley - spring barley), when it was grown once or twice after spring barley. In the experiment, no weed control was applied. Every year in the spring (at full emergence of the cereal) and before the harvest, the composition of weed species and weed density of particular weed species were determined, and before the harvest also their biomass. Weed density increased linearly on all plots during the 15-year period. The average values confirm the increase in weed biomass in the case when spring barley was grown once or twice after this crop; however, those differences were influenced by the previous situation only during some seasons. Weed density and biomass showed high year-to-year variability and a positive correlation with the amount of precipitation and a negative correlation with temperature during the period of the study. A negative correlation between the yield of barley and weed biomass was shown

Diversity of segetal weeds in pea (Pisum sativum L.) depending on crops chosen for a crop rotation system

This study, lasting from 1999 to 2006, was conducted at the Research Station in Tomaszkowo, which belongs to the University of Warmia and Mazury in Olsztyn. The experiment was set up on brown rusty soil classified as good rye complex 5 in the Polish soil valuation system. The analysis comprised weeds in fields sown with pea cultivated in two four-field crop rotation systems with a different first crop: A. potato – spring barley – pea – spring barley; B. mixture of spring barley with pea – spring barley – pea – spring barley. Every year, at the 2–3 true leaf stage of pea, the species composition and density of individual weed species were determined; in addition, before harvesting the main crop, the dry matter of weeds was weighed. The results were used to analyze the constancy of weed taxa, species diversity, and the evenness and dominance indices, to determine the relationships between all biological indicators analyzed and weather conditions, and to calculate the indices of similarity, in terms of species composition, density and biomass of weeds, between the crop rotations compared.The species richness, density and biomass of weeds in fields with field pea were not differentiated by the choice of the initial crop in a given rotation system. In the spring, the total number of identified taxa was 28 and it increased to 36 before the harvest of pea plants. Chenopodium album and Echinochloa crus-galli were the most numerous. Chenopodium album, Echinochloa crus-galli, Sonchus arvensis, Fallopia convolvulus and Viola arvensis were constant in all treatments, regardless of what the first crop in rotation was or when the observations were made.The species diversity and the evenness and species dominance indices varied significantly between years and dates of observations. Species diversity calculated on the basis of the density of weed species was higher in the rotation with a mixture of cereals and legumes, while that calculated on the basis of weed biomass was higher in the system with potato. The similarity indices, which express the convergence of floristic composition as well as of the density and biomass of weeds growing in pea fields in the two crop rotation systems compared, were within a broad range (42–86%). The biodiversity of weed communities was more closely correlated to total precipitation than to air temperature

The effect of interspecies interactions and water deficit on spring barley and red clover biomass accumulation at successive growth stages

A pot experiment was conducted in a greenhouse in Olsztyn, Poland, in the period 2010–2012. The aim of the study was to examine whether soil water deficit would change biomass volume and distribution of pure sown spring barley and red clover as well as growth rate during their joint vegetation and mutual interactions. The interactions between spring barley and red clover were of a competitive character, and the cereal was the stronger crop. The strength of this competition increased in time with the growing season. Through most of the growing season, the competition was poorer in water deficit conditions.The impact of clover on barley before the heading stage showed facilitation symptoms. Interspecific competition reduced the rate of barley biomass accumulation and decreased stem and leaf biomass towards the end of the growing season. Intensified translocation of assimilates from the vegetative parts to grain minimized the decrease in spike biomass.Water deficit stress had a more inhibitory effect on the biomass and growth rate of barley than competition, and competition did not exacerbate the adverse influence of water deficit stress on barley. Competition from barley significantly reduced the biomass and biomass accumulation rate of clover. Water deficit stress did not exacerbate barley’s competitive effect on clover, but it strongly inhibited the growth of aboveground biomass in pure-sown clover

Copy Number Gains of the Putative CRKL Oncogene in Laryngeal Squamous Cell Carcinoma Result in Strong Nuclear Expression of the Protein and Influence Cell Proliferation and Migration

Laryngeal squamous cell carcinoma is a major medical problem worldwide. Although our understanding of genetic changes and their consequences in laryngeal cancer has opened new therapeutic pathways over the years, the diagnostic as well as treatment options still need to be improved. In our previous study, we identifed CRKL (22q11) as a novel putative oncogene overexpressed and amplifed in a subset of LSCC tumors and cell lines. Here we analyze to what extent CRKL DNA copy number gains correlate with the higher expression of CRKL protein by performing IHC staining of the respective protein in LSCC cell lines (n=3) and primary tumors (n=40). Moreover, the importance of CRKL gene in regard to proliferation and motility of LSCC cells was analyzed with the application of RNA interference (siRNA). Beside the physiological cytoplasmic expression, the analysis of LSCC tumor samples revealed also nuclear expression of CRKL protein in 10/40 (25%) cases, of which three (7.5%), presented moderate or strong nuclear expression. Similarly, we observed a shift towards aberrantly strong nuclear abundance of the CRKL protein in LSCC cell lines with gene copy number amplifcations. Moreover, siRNA mediated silencing of CRKL gene in the cell lines showing its overexpression, signifcantly reduced proliferation (p<0.01) as well as cell migration (p<0.05) rates. Altogether, these results show that the aberrantly strong nuclear localization of CRKL is a seldom but recurrent phenomenon in LSCC resulting from the increased DNA copy number and overexpression of the gene. Moreover, functional analyses suggest that proliferation and migration of the tumor cells depend on CRKL expression.</p

Recurrent epigenetic silencing of the PTPRD tumor suppressor in laryngeal squamous cell carcinoma

Cellular processes like differentiation, mitotic cycle, and cell growth are regulated by tyrosine kinases with known oncogenic potential and tyrosine phosphatases that downmodulate the first. Therefore, tyrosine phosphatases are recurrent targets of gene alterations in human carcinomas. We and others suggested recently a tumor suppressor function of the PTPRD tyrosine phosphatase and reported homozygous deletions of the PTPRD locus in laryngeal squamous cell carcinoma. In this study, we investigated other gene-inactivating mechanisms potentially targeting PTPRD, including loss-of-function mutations and also epigenetic alterations like promoter DNA hypermethylation. We sequenced the PTPRD gene in eight laryngeal squamous cell carcinoma cell lines but did not identify any inactivating mutations. In contrast, by bisulfite pyrosequencing of the gene promoter region, we identified significantly higher levels of methylation (p = 0.001 and p = 0.0002, respectively) in 9/14 (64%) laryngeal squamous cell carcinoma cell lines and 37/79 (47%) of primary laryngeal squamous cell carcinoma tumors as compared to normal epithelium of the upper aerodigestive tract. There was also a strong correlation (p = 0.0001) between methylation and transcriptional silencing for the PTPRD gene observed in a cohort of 497 head and neck tumors from The Cancer Genome Atlas dataset suggesting that DNA methylation is the main mechanism of PTPRD silencing in these tumors. In summary, our data provide further evidence of the high incidence of PTPRD inactivation in laryngeal squamous cell carcinoma. We suggest that deletions and loss-of-function mutations are responsible for PTPRD loss only in a fraction of cases, whereas DNA methylation is the dominating mechanism of PTPRD inactivation.</p

Combined deletion and DNA methylation result in silencing of FAM107A gene in laryngeal tumors

Larynx squamous cell carcinoma (LSCC) is characterized by complex genotypes, with numerous abnormalities in various genes. Despite the progress in diagnosis and treatment of this disease, 5-year survival rates remain unsatisfactory. Therefore, the extended studies are conducted, with the aim to find genes, potentially implicated in this cancer. In this study, we focus on the FAM107A (3p14.3) gene, since we found its significantly reduced expression in LSCC by microarray profiling (Affymetrix U133 Plus 2.0 array). By RT-PCR we have confirmed complete FAM107A downregulation in laryngeal cancer cell lines (15/15) and primary tumors (21/21) and this finding was further supported by FAM107A protein immunohistochemistry (15/15). We further demonstrate that a combined two hit mechanism including loss of 3p and hypermethylation of FAM107A promoter region (in 9/15 cell lines (p p FAM107A expression (5 to 6 fold increase) in the UT-SCC-29 cell line, characterized by high DNA methylation. Therefore, we report the recurrent inactivation of FAM107A in LSCC, what may suggest that the gene is a promising tumor suppressor candidate involved in LSCC development.</p

Effects of zebra mussels on cladoceran communities under eutrophic conditions

The purpose of this study was to determine how zebra mussels affected cladoceran community structure under eutrophic conditions. We conducted a mesocosm study where we manipulated the presence of zebra mussels and the presence of large-bodied Daphnia (Daphnia magna and Daphnia pulicaria). We also conducted a complimentary life-table experiment to determine how water from the zebra mussel treatment affected the life history characteristics of the cladoceran species. We anticipated that small- and large-bodied cladoceran species would respond differently to changes in algal quality and quantity under the effects of zebra mussels. Large-bodied Daphnia successfully established in the zebra mussel treatment but failed to grow in the control. We did not observe positive relationships between food concentrations and cladoceran abundances. However, the phosphorus content in the seston indicated that food quality was below the threshold level for large-bodied cladocerans at the beginning of the experiment. We believe that zebra mussels quickly enhanced the phosphorus content in the seston due to the excretion of inorganic phosphorus, thus facilitating the development of large-bodied Daphnia. In conclusion, our results suggest that zebra mussels can alter the phosphorus content of seston in lakes and this can affect the dynamics of crustacean zooplankton