Conspiracy in bacterial genomes

The rank ordered distribution of the codon usage frequencies for 123 bacteriae is best fitted by a three parameters function that is the sum of a constant, an exponential and a linear term in the rank n. The parameters depend (two parabolically) from the total GC content. The rank ordered distribution of the amino acids is fitted by a straight line. The Shannon entropy computed over all the codons is well fitted by a parabola in the GC content, while the partial entropies computed over subsets of the codons show peculiar different behavior, exhibiting therefore a first conspiracy effect. Moreover the sum of the codon usage frequencies over particular sets, e.g. with C and A (respectively G and U) as i-th nucleotide, shows a clear linear dependence from the GC content, exhibiting another conspiracy effect.Comment: revised version: introduction and conclusion enhanced, references added, figures added, some tables remove

From the Mendeleev periodic table to particle physics and back to the periodic table

We briefly describe in this paper the passage from Mendeleev's chemistry (1869) to atomic physics (in the 1900's), nuclear physics (in the 1932's) and particle physics (from 1953 to 2006). We show how the consideration of symmetries, largely used in physics since the end of the 1920's, gave rise to a new format of the periodic table in the 1970's. More specifically, this paper is concerned with the application of the group SO(4,2)xSU(2) to the periodic table of chemical elements. It is shown how the Madelung rule of the atomic shell model can be used for setting up a periodic table that can be further rationalized via the group SO(4,2)xSU(2) and some of its subgroups. Qualitative results are obtained from this nonstandard table.Comment: 15 pages; accepted for publication in Foundations of Chemistry (special issue to commemorate the one hundredth anniversary of the death of Mendeleev who died in 1907); version 2: 16 pages; some sentences added; acknowledgment and references added; misprints correcte

On the equivalence of different approaches for generating multisoliton solutions of the KPII equation

The unexpectedly rich structure of the multisoliton solutions of the KPII equation has been explored by using different approaches, running from dressing method to twisting transformations and to the tau-function formulation. All these approaches proved to be useful in order to display different properties of these solutions and their related Jost solutions. The aim of this paper is to establish the explicit formulae relating all these approaches. In addition some hidden invariance properties of these multisoliton solutions are discussed

Kinematical superalgebras and Lie algebras of order 3

We study and classify kinematical algebras which appear in the framework of Lie superalgebras or Lie algebras of order three. All these algebras are related through generalised Inonü-Wigner contractions from either the orthosymplectic superalgebra or the de Sitter Lie algebra of order three