Genome sequence and genetic linkage analysis of Shiitake mushroom _Lentinula edodes_

_Lentinula edodes_ (Shiitake/Xianggu) is an important cultivated mushroom. Understanding the genomics and functional genomics of _L. edodes_ allows us to improve its cultivation and quality. Genome sequence is a key to develop molecular genetic markers for breeding and genetic manipulation. We sequenced the genome of _L. edodes_ monokaryon L54A using Roche 454 and ABI SOLiD genome sequencing. Sequencing reads of about 1400Mb were de novo assembled into a 40.2 Mb genome sequence. We compiled the genome sequence into a searchable database with which we have been annotating the genes and analyzing the metabolic pathways. In addition, we have been using many molecular techniques to analyze genes differentially expressed during development. Gene ortholog groups of _L. edodes_ genome sequence compared across genomes of several fungi including mushrooms identified gene families unique to mushroom-forming fungi. We used a mapping population of haploid basidiospores of dikaryon L54 for genetic linkage analysis. High-quality variations such as single nucleotide polymorphisms, insertions, and deletions of the mapping population formed a high-density genetic linkage map. We compared the linkage map to the _L. edodes_ L54A genome sequence and located selected quantitative trait loci. The Shiitake community will benefit from these resources for genetic studies and breeding.
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Viscoelastic solid-repellent coatings for extreme water saving and global sanitation

Water scarcity threatens over half of the world’s population, yet over 141 billion litres of fresh water are used globally each day for toilet flushing. This is nearly six times the daily water consumption of the population in Africa. The toilet water footprint is so large primarily because large volumes of water are necessary for the removal of human faeces; human faeces is viscoelastic and sticky in nature, causing it to adhere to conventional surfaces. Here, we designed and fabricated the liquid-entrenched smooth surface (LESS)—a sprayable non-fouling coating that can reduce cleaning water consumption by ~90% compared with untreated surfaces due to its extreme repellency towards liquids, bacteria and viscoelastic solids. Importantly, LESS-coated surfaces can repel viscoelastic solids with dynamic viscosities spanning over nine orders of magnitude (that is, three orders of magnitude higher than has previously been reported for other repellent materials). With an estimated 1 billion or more toilets and urinals worldwide, incorporating LESS coating into sanitation systems will have significant implications for global sanitation and large-scale wastewater reduction for sustainable water management

Robust estimation of bacterial cell count from optical density

Optical density (OD) is widely used to estimate the density of cells in liquid culture, but cannot be compared between instruments without a standardized calibration protocol and is challenging to relate to actual cell count. We address this with an interlaboratory study comparing three simple, low-cost, and highly accessible OD calibration protocols across 244 laboratories, applied to eight strains of constitutive GFP-expressing E. coli. Based on our results, we recommend calibrating OD to estimated cell count using serial dilution of silica microspheres, which produces highly precise calibration (95.5% of residuals <1.2-fold), is easily assessed for quality control, also assesses instrument effective linear range, and can be combined with fluorescence calibration to obtain units of Molecules of Equivalent Fluorescein (MEFL) per cell, allowing direct comparison and data fusion with flow cytometry measurements: in our study, fluorescence per cell measurements showed only a 1.07-fold mean difference between plate reader and flow cytometry data

In vitro antifungal activity of the aqueous extract of scutellaria baicalensis Georgi root against Candida albicans

Candida albicans is one of the most prevalent human fungal pathogens and causes candidiasis. It exists as part of the normal flora in healthy individuals but becomes life-threatening in patients with acquired immune deficiency syndrome (AIDS), cancer or organ transplantation. Conventional treatments rely on polyenes, azoles and echinocandins, but hepatotoxicity and poor gastrointestinal absorption have been documented. The emergence of resistant isolates from previously susceptible species has also been reported