Statistical mechanics of warm and cold unfolding in proteins

We present a statistical mechanics treatment of the stability of globular proteins which takes explicitly into account the coupling between the protein and water degrees of freedom. This allows us to describe both the cold and the warm unfolding, thus qualitatively reproducing the known thermodynamics of proteins.Comment: 5 pages, REVTex, 4 Postscript figure

Reentrant phase diagram of branching annihilating random walks with one and two offsprings

We investigate the phase diagram of branching annihilating random walks with one and two offsprings in one dimension. A walker can hop to a nearest neighbor site or branch with one or two offsprings with relative ratio. Two walkers annihilate immediately when they meet. In general, this model exhibits a continuous phase transition from an active state into the absorbing state (vacuum) at a finite hopping probability. We map out the phase diagram by Monte Carlo simulations which shows a reentrant phase transition from vacuum to an active state and finally into vacuum again as the relative rate of the two-offspring branching process increases. This reentrant property apparently contradicts the conventional wisdom that increasing the number of offsprings will tend to make the system more active. We show that the reentrant property is due to the static reflection symmetry of two-offspring branching processes and the conventional wisdom is recovered when the dynamic reflection symmetry is introduced instead of the static one.Comment: 14 pages, Revtex, 4 figures (one PS figure file upon request) (submitted to Phy. Rev. E

Avalanche Behavior in an Absorbing State Oslo Model

Self-organized criticality can be translated into the language of absorbing state phase transitions. Most models for which this analogy is established have been investigated for their absorbing state characteristics. In this article, we transform the self-organized critical Oslo model into an absorbing state Oslo model and analyze the avalanche behavior. We find that the resulting gap exponent, D, is consistent with its value in the self-organized critical model. For the avalanche size exponent, \tau, an analysis of the effect of the external drive and the boundary conditions is required.Comment: 4 pages, 2 figures, REVTeX 4, submitted to PRE Brief Reports; added reference and some extra information in V

Critical behavior of a one-dimensional monomer-dimer reaction model with lateral interactions

A monomer-dimer reaction lattice model with lateral repulsion among the same species is studied using a mean-field analysis and Monte Carlo simulations. For weak repulsions, the model exhibits a first-order irreversible phase transition between two absorbing states saturated by each different species. Increasing the repulsion, a reactive stationary state appears in addition to the saturated states. The irreversible phase transitions from the reactive phase to any of the saturated states are continuous and belong to the directed percolation universality class. However, a different critical behavior is found at the point where the directed percolation phase boundaries meet. The values of the critical exponents calculated at the bicritical point are in good agreement with the exponents corresponding to the parity-conserving universality class. Since the adsorption-reaction processes does not lead to a non-trivial local parity-conserving dynamics, this result confirms that the twofold symmetry between absorbing states plays a relevant role in determining the universality class. The value of the exponent $\delta_2$, which characterizes the fluctuations of an interface at the bicritical point, supports the Bassler-Brown's conjecture which states that this is a new exponent in the parity-conserving universality class.Comment: 19 pages, 22 figures, to be published in Phys. Rev

Onset of criticality and transport in a driven diffusive system

We study transport properties in a slowly driven diffusive system where the transport is externally controlled by a parameter $p$. Three types of behavior are found: For $p<p'$ the system is not conducting at all. For intermediate $p$ a finite fraction of the external excitations propagate through the system. Third, in the regime $p>p_c$ the system becomes completely conducting. For all $p>p'$ the system exhibits self-organized critical behavior. In the middle of this regime, at $p_c$, the system undergoes a continuous phase transition described by critical exponents.Comment: 4 latex/revtex pages; 4 figure

Synchronization Model for Stock Market Asymmetry

The waiting time needed for a stock market index to undergo a given percentage change in its value is found to have an up-down asymmetry, which, surprisingly, is not observed for the individual stocks composing that index. To explain this, we introduce a market model consisting of randomly fluctuating stocks that occasionally synchronize their short term draw-downs. These synchronous events are parameterized by a ``fear factor'', that reflects the occurrence of dramatic external events which affect the financial market.Comment: 4 pages, 4 figure

Pair contact process with diffusion - A new type of nonequilibrium critical behavior?

Recently Carlon et. al. investigated the critical behavior of the pair contact process with diffusion [cond-mat/9912347]. Using density matrix renormalization group methods, they estimate the critical exponents, raising the possibility that the transition might belong to the same universality class as branching annihilating random walks with even numbers of offspring. This is surprising since the model does not have an explicit parity-conserving symmetry. In order to understand this contradiction, we estimate the critical exponents by Monte Carlo simulations. The results suggest that the transition might belong to a different universality class that has not been investigated before.Comment: RevTeX, 3 pages, 2 eps figures, adapted to final version of cond-mat/991234

A Model for the Thermodynamics of Globular Proteins

Comments: 6 pages RevTeX, 6 Postscript figures. We review a statistical mechanics treatment of the stability of globular proteins based on a simple model Hamiltonian taking into account protein self interactions and protein-water interactions. The model contains both hot and cold folding transitions. In addition it predicts a critical point at a given temperature and chemical potential of the surrounding water. The universality class of this critical point is new