CCD data acquisition systems at Lick and Keck Observatories

This paper will describe and compare two distinct but related CCD data acquisition systems (DAS) currently under development at Lick and Keck Observatories. Although these two systems have a number of major architectural differences, they share a considerable amount of common hardware and software. Both of these new systems build on a large body of proven software that is the foundation of the existing CCD DAS currently in use at Lick Observatory. Both will provide support for reading up to four on-chip amplifiers per CCD and/or reading out mosaics of CCD chips. In addition, they will provide the capability for interactive, real-time adjustment of CCD waveforms for engineering purposes. Each of these two systems is composed of three major subsystems: (1) an instrument computer and its software; (2) a data capture computer and its software; and (3) a CCD/dewar controller and its software. The instrument computer is a Unix workstation, and the functions it provides include user interfaces, the interactive real-time display of CCD images, and the recording of image and FITS header data to disk and/or tape. The data capture computer is responsible for the packaging and high-speed transfer of the CCD pixel data stream into a bulk RAM, and the subsequent transfer of this data to the instrument computer. The CCD/dewar controller generates the waveforms for clocking the CCD, digitizes the pixel data, and transmits it via high-speed link to the data capture computer. It is also responsible for monitoring and controlling the dewar temperature and cryogen levels. Given the number of different types of processors and high-speed data links employed in both systems, a major emphasis of this paper will be on the various forms of interprocessor communications utilized for data transfer and distributed process synchronization

ESI, a new Keck Observatory echellette spectrograph and imager

The Echellette Spectrograph and Imager (ESI) is a multipurpose instrument which has been delivered by the Instrument Development Laboratory of Lick Observatory for use at the Cassegrain focus of the Keck II telescope. ESI saw first light on August 29, 1999. ESI is a multi-mode instrument that enables the observer to seamlessly switch between three modes during an observation. The three modes of ESI are: An R=13,000-echellette mode; Low-dispersion prismatic mode; Direct imaging mode. ESI contains a unique flexure compensation system which reduces the small instrument flexure to negligible proportions. Long-exposure images on the sky show FWHM spot diameters of 34 microns (0.34") averaged over the entire field of view. These are the best non-AO images taken in the visible at Keck Observatory to date. Maximum efficiencies are measured to be 28% for the echellette mode and greater than 41% for low-dispersion prismatic mode including atmospheric, telescope and detector losses. In this paper we describe the instrument and its development. We also discuss the performance-testing and some observational results.Comment: 10 pages, 14 figures, 8tables, accepted for publication in PASP, 15 April 200

Computational and Serologic Analysis of Novel and Known Viruses in Species Human Adenovirus D in Which Serology and Genomics Do Not Correlate

In November of 2007 a human adenovirus (HAdV) was isolated from a bronchoalveolar lavage (BAL) sample recovered from a biopsy of an AIDS patient who presented with fever, cough, tachycardia, and expiratory wheezes. To better understand the isolated virus, the genome was sequenced and analyzed using bioinformatic and phylogenomic analysis. The results suggest that this novel virus, which is provisionally named HAdV-D59, may have been created from multiple recombination events. Specifically, the penton, hexon, and fiber genes have high nucleotide identity to HAdV-D19C, HAdV-D25, and HAdV-D56, respectively. Serological results demonstrated that HAdV-D59 has a neutralization profile that is similar yet not identical to that of HAdV-D25. Furthermore, we observed a two-fold difference between the ability of HAdV-D15 and HAdV-D25 to be neutralized by reciprocal antiserum indicating that the two hexon proteins may be more similar in epitopic conformation than previously assumed. In contrast, hexon loops 1 and 2 of HAdV-D15 and HAdV-D25 share 79.13 and 92.56 percent nucleotide identity, respectively. These data suggest that serology and genomics do not always correlate

The DEIMOS spectrograph for the Keck II telescope:

The DEIMOS spectrograph is a multi-object spectrograph being built for Keck II. DEIMOS was delivered in February 2002, became operational in May, and is now about three-quarters of the way through its commissioning period. This paper describes the major problems encountered in completing the spectrograph, with particular emphasis on optical quality and image motion. The strategies developed to deal with these problems are described. Overall, commissioning is going well, and it appears that DEIMOS will meet all of its major performance goals