Drought stress - related functional characterization of transcription factor GmNAC085 in soybean

Studies on soybean GmNAC085 transcription factor revealed that the gene expression in plants was induced by water shortage treatments and its overexpression in the model plant Arabidopsis displayed improved plant tolerance characteristics towards drought stress. In this study, we continued analyzing the biological functions of GmNAC085 using transgenic soybean system overexpressing GmNAC085 gene, by targeting at a number of plant physiological features and biochemical activities in response to limited water growing condition. Compared to the wild-type, the transgenic line demonstrated that it possessed stress tolerance characters, including enhanced elongation of taproot, minimized reduction of shoot growth, lower intracellular H2O2 content and stronger peroxidase enzyme activity under drought condition. The results of this study therefore suggest the transgenic plants had better drought tolerance and the GmNAC085 plays important role in aiding plants to cope with water deficit condition, probably via regulating the growth of roots and shoots, and activities of reactive-oxygen-species- scavenging enzymes

ANAMMOX TREATMENT PERFORMANCE USING MALT CERAMICS AS A BIOMASS CARRIER

Joint Research on Environmental Science and Technology for the Eart

Classification Methods for Mapping Mangrove Extents and Drivers of Change in Thanh Hoa Province, Vietnam during 2005-2018

Mangrove forests have been globally recognised as their vital functions in preventing coastal erosion, mitigating effects of wave actions and protecting coastal habitats and adjacent shoreline land-uses from extreme coastal events. However, these functions are under severe threats due to the rapid growth of population, intensive shrimp farming and the increased intensity of severe storms in Hau Loc and Nga Son districts, Thanh Hoa province. This research was conducted to monitor spatial-temporal changes in mangrove extents using Landsat and Sentinel imageries from 2005 to 2018. Unsupervised and supervised classification methods and vegetation indices were tested to select the most suitable classification method for study sites, then to quantify mangrove extents and their changes in selected years. The findings show that supervised classification was the most suitable in study sites compared to vegetation indices and unsupervised classification. Mangrove forest extents increased by 7.5 %, 38.6 %, and 47.8 % during periods of 2005 - 2010, 2010 - 2015 and 2015 - 2018, respectively. An increase of mangrove extents resulted from national programs of mangrove rehabilitation and restoration during 2005- 2018, increased by 278.0 ha (123.0 %)

Mobilising community-based research on zoonotic infections: A case study of longitudinal cohorts in Vietnam

We initiated the Vietnam Initiative on Zoonotic Infections (VIZIONS) research program to better understand the epidemiology of disease transmission at the human–animal interface in Vietnamese rural communities and to integrate One Health approaches to disease surveillance. We established a longitudinal community cohort study of individuals with occupational exposure to animals, which involves concurrent targeted sampling from domestic livestock species and follow-up monitoring of human clinical cases. The project was implemented by government agencies at the provincial and district levels of the public health and animal health sectors in Vietnam. Engaging with rural communities builds response capacity at the grassroots level, and has improved dialogue between local stakeholders responsible for monitoring human and animal health. Here we describe the process of initiating participatory research and cohort field implementation over the first year in two study sites in Vietnam.Keywords: Vietnam, participatory research, zoonoses, field epidemiolog

Monitoring Changes in Coastal Mangrove Extents Using Multi-Temporal Satellite Data in Selected Communes, Hai Phong City, Vietnam

Mangrove forests are important and known as one of the most productive ecosystems in the tropics. They reduce the impacts of extreme events, provide important breeding grounds for aquatic species and build the resilience of ecosystem-dependent coastal communities. On the contrary, they are also known as one of the most threatened and vulnerable ecosystems worldwide, which have experienced a dramatic decline due to extensive coastal development during the last half-century. Remote sensing techniques have demonstrated a high potential to detect, identify, map, and monitor mangrove conditions and its changes, which is reflected by a large number of scientific papers published on this topic. The aim of this study was to investigate the multi-decadal changes of mangrove forests selected communes in Hai Phong city, North Vietnam, based on using Landsat and Sentinel 2 data from 2000 to 2018. The study used these continuous steps: 1) data pre-processing; 2) image classification using Normalized Difference Vegetation Index; 3) accuracy assessments; and 4) multi-temporal change detection and spatial analysis of mangrove forests. The classification maps in comparison with the ground reference data showed the satisfactory agreement with the overall accuracy was higher than 80.0%. From 2000 to 2018, the areas of mangrove forests in the study regions  increased by 584.2 ha in Dai Hop and Bang La communes (Region 1) and by 124.2 ha in Tan Thanh, Ngoc Xuyen and Ngoc Hai communes (Region 2), mainly due to the boom of mangrove planting projects and good mangrove management at the local community level

A tightly clustered hepatitis E virus genotype 1a is associated with endemic and outbreak infections in Bangladesh.

BACKGROUND: Hepatitis E virus (HEV) infection is endemic in Bangladesh and there are occasional outbreaks. The molecular characteristics and pathogenesis of endemic and outbreak HEV strains are poorly understood. We compared the genetic relatedness and virulence associated mutations of endemic HEV strains with outbreak strains. METHODS: We analyzed systematically collected serum samples from HEV immunoglobulin M (IgM) positive patients attended at Bangabandhu Sheikh Mujib Medical University, Dhaka from August 2013 to June 2015. HEV RNA positive samples were subjected to whole genome sequencing. Genotype and subtype of the strains were determined by phylogenetic analysis. Virulence associated mutations e.g. acute viral hepatitis (AVH), fulminant hepatic failure (FHF), chronic hepatitis, ribavirin treatment failure (RTF), B and T cell neutralization epitopes were determined. RESULTS: 92 HEV immunoglobulin M (IgM) antibody positive plasma samples (43 in 2013-2014 and 49 in 2014-2015) were studied. 77.1% (70/92) of the samples were HEV RNA positive. A 279 bp open reading frame (ORF) 2 and ORF 3 sequence was obtained from 54.2% (38/70) of the strains. Of these 38 strains, whole genome sequence (WGS) was obtained from 21 strains. In phylogenetic analysis of 38 (279 bp) sequence all HEV sequences belonged to genotype 1 and subtype 1a. Further phylogenetic analysis of 21 HEV WGS, Bangladeshi HEV sequences clustered with genotype 1a sequences from neighboring countries. Within genotype 1a cluster, Bangladesh HEV strains formed a separate cluster with the 2010 HEV outbreak strains from northern Bangladesh. 80.9 to 100% of the strains had A317T, T735I, L1120I, L1110F, P259S, V1479I, G1634K mutations associates AVH, FHF and RTF. Mutations in T cell recognition epitope T3, T5, T7 was observed in 76.1%, 100% and 100% of the strains respectively. CONCLUSION: Strains of HEV genotype 1a are dominant in Bangladesh and are associated with endemic and outbreak of HEV infection. HEV isolates in Bangladesh have high prevalence of virulence associated mutations and mutation which alters antigenicity to B and T cell epitopes