Complete chloroplast genomes of Vachellia nilotica and Senegalia senegal : Comparative genomics and phylogenomic placement in a new generic system

Vachellia and Senegalia are the most important genera in the subfamily Mimosoideae (Fabaceae). Recently, species from both genera were separated from the long-characterized Acacia due to their macro-morphological characteristics. However, this morpho-taxonomic differentiation struggles to discriminate some species, for example, Vachellia nilotica and Senegalia senegal. Therefore, sequencing the chloroplast (cp) genomes of these species and determining their phylogenetic placement via conserved genes may help to validate the taxonomy. Hence, we sequenced the cp genomes of V. nilotica and S. senegal, and the results showed that the sizes of the genomes are 165.3 and 162.7 kb, respectively. The cp genomes of both species comprised large single-copy regions (93,849~91,791 bp) and pairs of inverted repeats (IR; 26,093~26,008 bp). The total numbers of genes found in the V. nilotica and S. senegal cp genomes were 135 and 132, respectively. Approximately 123:130 repeats and 290:281 simple sequence repeats were found in the S. senegal and V. nilotica cp genomes, respectively. Genomic characterization was undertaken by comparing these genomes with those of 17 species belonging to related genera in Fabaceae. A phylogenetic analysis of the whole genome dataset and 56 shared genes was undertaken by generating cladograms with the same topologies and placing both species in a new generic system. These results support the likelihood of identifying segregate genera from Acacia with phylogenomic disposition of both V. nilotica and S. senegal in the subfamily Mimosoideae. The current study is the first to obtain complete genomic information on both species and may help to elucidate the genome architecture of these species and evaluate the genetic diversity among species.publishedVersio

Unraveling the chloroplast genomes of two Prosopis species to identify its genomic information, comparative analyses and phylogenetic relationship

Genus Prosopis (family Fabaceae) are shrubby trees, native to arid and semi-arid regions of Asia, Africa, and America and known for nitrogen fixation. Here, we have sequenced the complete chloroplast (cp) genomes of two Prosopis species (P. juliflora and P. cineraria) and compared them with previously sequenced P. glandulosa, Adenanthera microsperma, and Parkia javanica belonging to the same family. The complete genome sequences of Prosopis species and related species ranged from 159,389 bp (A. microsperma) to 163,677 bp (P. cineraria). The overall GC contents of the genomes were almost the similar (35.9–36.6%). The P. juliflora and P. cineraria genomes encoded 132 and 131 genes, respectively, whereas both the species comprised of 85 protein-coding genes higher than other compared species. About 140, 134, and 129 repeats were identified in P. juliflora, P. cineraria and P. glandulosa cp genomes, respectively. Similarly, the maximum number of simple sequence repeats were determined in P. juliflora (88), P. cineraria (84), and P. glandulosa (78). Moreover, complete cp genome comparison determined a high degree of sequence similarity among P. juliflora, P. cineraria, and P. glandulosa, however some divergence in the intergenic spacers of A. microsperma and Parkia javanica were observed. The phylogenetic analysis showed that P. juliflora is closer to P. cineraria than P. glandulosa.publishedVersio

The epidemiology of stroke In a developing country (Pakistan)

Ischemic stroke is a major cause of neurological morbidity and mortality. The objective of this review article is to summarize facts pertaining to acute ischemic stroke and its various aspects in a developing country like Pakistan, where resources are limited and the healthcare system is underdeveloped. No large-scale epidemiological studies are available to determine the true incidence of stroke in Pakistan. We conducted a study to determine the prevalence of several important stroke risk factors among Pakistani stroke patients, and to determine whether these risk factors differ among urban versus rural populations. We also used existing data from literature to compare overall stroke incidence in Pakistan to that in developed countries. In this study we found that for stroke besides hypertension, prolonged contraceptive use and pregnancy are additional risk factors in Pakistan. Which is more prevalent in urban populations than rural population? Developed countries except Germany have much lower stroke incidences than Pakistan

Comparative chloroplast genomics of endangered Euphorbia species : Insights into hotspot divergence, repetitive sequence variation, and phylogeny.

Euphorbia is one of the largest genera in the Euphorbiaceae family, comprising 2000 species possessing commercial, medicinal, and ornamental importance. However, there are very little data available on their molecular phylogeny and genomics, and uncertainties still exist at a taxonomic level. Herein, we sequence the complete chloroplast (cp) genomes of two species, E. larica and E. smithii, of the genus Euphorbia through next-generation sequencing and perform a comparative analysis with nine related genomes in the family. The results revealed that the cp genomes had similar quadripartite structure, gene content, and genome organization with previously reported genomes from the same family. The size of cp genomes ranged from 162,172 to 162,358 bp with 132 and 133 genes, 8 rRNAs, 39 tRNA in E. smithii and E. larica, respectively. The numbers of protein-coding genes were 85 and 86, with each containing 19 introns. The four-junction regions were studied and results reveal that rps19 was present at JLB (large single copy region and inverted repeat b junction) in E. larica where its complete presence was located in the IRb (inverted repeat b) region in E. smithii. The sequence comparison revealed that highly divergent regions in rpoC1, rpocB, ycf3, clpP, petD, ycf1, and ndhF of the cp genomes might provide better understanding of phylogenetic inferences in the Euphorbiaceae and order Malpighiales. Phylogenetic analyses of this study illustrate sister clades of E. smithii with E. tricullii and these species form a monophyletic clade with E. larica. The current study might help us to understand the genome architecture, genetic diversity among populations, and evolutionary depiction in the genera.publishedVersio

Quantitatively evaluating the effect of social barriers: a case-control study of family members' opposition and women's intention to use contraception in Pakistan.

BACKGROUND: Uptake of family planning services in Pakistan has remained slow over the past decade despite a rapid increase in availability and awareness, indicating that social barriers may be preventing uptake. Social barriers such as opposition by family members have largely been studied qualitatively; there is a lack of quantitative evidence about the effect of different family members' opposition on women's intention to use contraceptives. The objective of this study was to quantitatively evaluate the effect of family members' opposition to family planning on intention to use contraception amongst poor women in Pakistan who have physical access to family planning services. METHODS: An unmatched case control study (nested within a larger cohort study) was conducted in two public hospitals in Karachi, Pakistan. Univariable and multivariable logistic regression analyses were conducted to compare risk factors between women that were not intending to use any contraceptive methods in the future (cases) and women that were planning to use contraceptive methods (controls). RESULTS: 248 cases and 496 controls were included in the study. Negative contraceptive intent was associated with no knowledge of contraception (AOR = 3.79 [2.43-5.90]; p < 0.001), husband's opposition (AOR = 21.87 [13.21-36.21]; p < 0.001) and mother-in-law's opposition (AOR = 4.06 [1.77-9.30]; p < 0.001). CONCLUSIONS: This study is the first to quantitatively assess the effect of opposition by different family members on women's contraceptive intent in Pakistan. Our results indicate that of all family members, husband's opposition has the strongest effect on women's intention to use contraception, even when the women have knowledge of and physical access to family planning services

RISK FACTORS OF SCABIES IN PATIENTS ATTENDING AT TERTIARY CARE HOSPITAL

Objective: The objective is to find the risk factors among the patients attending department of medicine, OPD of  Bahawal Victoria Hospital, Bahawalpur. Study design: Descriptive cross-sectional study Place and Duration of study: Department of Medicine, OPD Bahawal Victoria Hospital, Bahawalpur. From 1st March to 25th September 2017. Materials and Methods: It is a descriptive cross-sectional study. Study was performed in Department of Medicine, OPD Bahawal Victoria Hospital, Bahawalpur. People with scabies seeking care in Department of Medicine Bahawal Victoria Hospital, Bahawalpur, were selected for the study. Convenient type of sampling technique was used to calculate the sample size. Total number of 1082 patients of both male &amp; female gender and of all ages suffering from scabies was included in the study. Subjects were assessed by gender, age, their residence (rural or urban), marital status, status of education, monthly income, itching, body part of itching, time of itching (day or night) and other things like sharing of clothes, sharing of towels, oral hygiene, washing hands, close contact with pets etc. Data was analyzed using SPSS computer software version 23. Results: Overall, there were 100% (n=1082) scabies patients were included, in this study, both genders. Itching was presented in 90.1% (n=975) patients, while 57.1% (n=618) patients were also having red lesions. Regarding the part of body involved in itching, 36.5% (n=395) and 67.5% (n=730) patients experienced itching on face &amp; nipples, 44.4% (n=480), 76.9% (n=832), 63.7% (n=689) and 85.6% (n=926) patients experienced itching on web spaces, soles, wrist and around umbilicus respectively. 38.1% (n=412) patients experienced it in axilla and 66.6% (n=721) on palms, while 56.7% (n=614) patients experienced itching on genitalia. Out of 1082 patients, 91.7% (n=992) patients were having these symptoms at day time, 4.7% (n=51) at night time, while 3.6% (n=39) having these symptoms at both day &amp; night time. Conclusion: According to our research scabies is more common among males due to more exposure of males to the external environment. People with weak immune systems and the elderly are more at risk of developing scabies. Scabies is more common among rural communities because of low standard of quality of life and poor health education. Keywords: Risk Factors, Scabies, itching, skin lesion

Transcriptomic analysis of Dubas bug (Ommatissus lybicus Bergevin) infestation to Date Palm

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Development of Environment-Friendly Concrete through Partial Addition of Waste Glass Powder (WGP) as Cement Replacement

This paper presents the study carried out on the utilization of Waste Glass Powder (WGP) as supplementary cementitious material in concrete. The evaluation of the influence of WGP on the mechanical properties of concrete was carried out by casting and testing of concrete samples as per ASTM standards (cylinders and beam elements). The control samples were designed to represent field conditions with a target compressive strength of 20,000 kPa. The Portland cement in concrete was substituted with WGP in proportions of 0%-35% by weight, in increments of 5%. Two curing domains were adopted in the preparation of the test samples to evaluate the effect of pozzolanic material wherein the tested samples were cured for 28, 56, and 84 days. The study results indicated a reduction in compressive strength of concrete up to 10% with partial replacement of cement with 25% of WGP when standard curing of 28 days was adopted. Furthermore, with the same replacement proportion and prolonged curing for 84 days, the gap in strength reduction was reduced by 5%. However, a significant decrease in workability was noted between the control concrete samples and glass powder infused concrete. Furthermore, the Waste Glass Powder Concrete (WGPC) exhibited an improved flexural strength with the modulus of rupture for WGPC being 2% higher than control concrete at the age of 84 days. Based on the results of this study it was concluded that 25% replacement of cement with WGP provides an optimum replacement ratio. Doi: 10.28991/cej-2020-03091620 Full Text: PD