Development and yield traits indicate that the constitutive wound response phenotype of prosystemin overexpressing tomato plants entails no fitness penalty.

Systemin is a peptide hormone that regulates the wound response in tomato plants. Consequently, the overexpression of its prosystemin (ProSys) precursor protein leads to a resource-demanding constitutive activation of tomato’s wound-response. According to the growth vs. defense resource allocation premise, ProSys overexpression should negatively affect the physiological fitness of tomato plants. The present study was performed to explore why the opposite effect was steadily observed, instead. It was based on the premise that a better understanding of this unexpected outcome could help establish improved wound and related defense responses without negatively affecting crop productivity. To this effect, an experimental strategy was deployed to measure various physiological, biochemical and molecular parameters associated with either development, productivity, defense or in combination in untransformed (WT) and ProSys overexpressing (ProSys-OE) tomato plants. Thus, the chlorophyll fluorescence data obtained from plants grown under greenhouse experiments indicated that photosynthetic performance was not affected in ProSys-OE plants which also grew 7–14% taller than WT plants. Moreover, they showed accelerated flowering and yielded fruits of increased size (7–16% taller and wider) and weight (16–58% heavier), with modified fruit quality in terms of firmness (28% higher), titratable acidity (27–32% higher) and chemical composition. These findings suggest two complementary possibilities: (i) systemin is able to modulate both the wound response and plant development through the activation of jasmonic acid biosynthesis and signaling, and (ii) ProSys, an intrinsically disordered protein, acts as a signaling hub to regulate development and defense programs. These results shed light on the understanding of this plant regulatory mechanism and further suggest that systemin/ProSys-based regulation is central to control the defense-development balance in tomato. This knowledge could eventually lead to improved and more environmentally sound agricultural production practices

Transcriptomic analysis of grain amaranth (<it>Amaranthus hypochondriacus</it>) using 454 pyrosequencing: comparison with <it>A. tuberculatus</it>, expression profiling in stems and in response to biotic and abiotic stress

<p>Abstract</p> <p>Background</p> <p><it>Amaranthus hypochondriacus</it>, a grain amaranth, is a C4 plant noted by its ability to tolerate stressful conditions and produce highly nutritious seeds. These possess an optimal amino acid balance and constitute a rich source of health-promoting peptides. Although several recent studies, mostly involving subtractive hybridization strategies, have contributed to increase the relatively low number of grain amaranth expressed sequence tags (ESTs), transcriptomic information of this species remains limited, particularly regarding tissue-specific and biotic stress-related genes. Thus, a large scale transcriptome analysis was performed to generate stem- and (a)biotic stress-responsive gene expression profiles in grain amaranth.</p> <p>Results</p> <p>A total of 2,700,168 raw reads were obtained from six 454 pyrosequencing runs, which were assembled into 21,207 high quality sequences (20,408 isotigs + 799 contigs). The average sequence length was 1,064 bp and 930 bp for isotigs and contigs, respectively. Only 5,113 singletons were recovered after quality control. Contigs/isotigs were further incorporated into 15,667 isogroups. All unique sequences were queried against the nr, TAIR, UniRef100, UniRef50 and Amaranthaceae EST databases for annotation. Functional GO annotation was performed with all contigs/isotigs that produced significant hits with the TAIR database. Only 8,260 sequences were found to be homologous when the transcriptomes of <it>A. tuberculatus </it>and <it>A. hypochondriacus </it>were compared, most of which were associated with basic house-keeping processes. Digital expression analysis identified 1,971 differentially expressed genes in response to at least one of four stress treatments tested. These included several multiple-stress-inducible genes that could represent potential candidates for use in the engineering of stress-resistant plants. The transcriptomic data generated from pigmented stems shared similarity with findings reported in developing stems of Arabidopsis and black cottonwood (<it>Populus trichocarpa</it>).</p> <p>Conclusions</p> <p>This study represents the first large-scale transcriptomic analysis of <it>A. hypochondriacus</it>, considered to be a highly nutritious and stress-tolerant crop. Numerous genes were found to be induced in response to (a)biotic stress, many of which could further the understanding of the mechanisms that contribute to multiple stress-resistance in plants, a trait that has potential biotechnological applications in agriculture.</p