A Novel <i>In Vitro</i> Method for Detecting Undifferentiated Human Pluripotent Stem Cells as Impurities in Cell Therapy Products Using a Highly Efficient Culture System

<div><p>Innovative applications of cell therapy products (CTPs) derived from human pluripotent stem cells (hPSCs) in regenerative medicine are currently being developed. The presence of residual undifferentiated hPSCs in CTPs is a quality concern associated with tumorigencity. However, no simple <i>in vitro</i> method for direct detection of undifferentiated hPSCs that contaminate CTPs has been developed. Here, we show a novel approach for direct and sensitive detection of a trace amount of undifferentiated human induced pluripotent stem cells (hiPSCs) using a highly efficient amplification method in combination with laminin-521 and Essential 8 medium. Essential 8 medium better facilitated the growth of hiPSCs dissociated into single cells on laminin-521 than in mTeSR1 medium. hiPSCs cultured on laminin-521 in Essential 8 medium were maintained in an undifferentiated state and they maintained the ability to differentiate into various cell types. Essential 8 medium allowed robust hiPSC proliferation plated on laminin-521 at low cell density, whereas mTeSR1 did not enhance the cell growth. The highly efficient culture system using laminin-521 and Essential 8 medium detected hiPSCs spiked into primary human mesenchymal stem cells (hMSCs) or human neurons at the ratio of 0.001%–0.01% as formed colonies. Moreover, this assay method was demonstrated to detect residual undifferentiated hiPSCs in cell preparations during the process of hMSC differentiation from hiPSCs. These results indicate that our highly efficient amplification system using a combination of laminin-521 and Essential 8 medium is able to detect a trace amount of undifferentiated hPSCs contained as impurities in CTPs and would contribute to quality assessment of hPSC-derived CTPs during the manufacturing process.</p></div

Characterization of 253G1 cells subcultured on laminin-521 in Essential 8 medium.

<p>(A) Expression levels of undifferentiated cell markers (<i>OCT3/4, NANOG, SOX2 and LIN28</i>) in 253G1 cells subcultured on laminin-521 in Essential 8 were determined using qRT-PCR. Relative mRNA expression levels are presented as ratios to the level of that in control cells on Matrigel. Results are the mean ± SD (n = 3). (B) <i>In vitro</i> differentiation analysis of 253G1 cells subcultured on laminin-521 in Essential 8 medium. Immunostaining of the markers for three germ layers are shown: endoderm (alpha-fetoprotein (AFP)), mesoderm (α-smooth muscle actin (SMA)) and ectoderm (βIII tubulin). Scale bars, 200 µm. (C) Expression levels of differentiated cell markers in embryoid bodies (EBs) derived from 253G1 cells: endoderm (<i>GATA6, SOX17</i>), mesoderm (<i>CDH5, FOXF1</i>), ectoderm (<i>SOX1, PAX6</i>). Relative mRNA expression levels are presented as ratios to the level of that in control cells (EBs at Day 10). Results are the mean ± SD (n = 3). (D-E) Teratomas derived from 253G1 cells cultured on laminin-521 in Essential 8 medium are shown. Hematoxylin and eosin staining showed the features of three germ layers: Ep, epithelium-like tissue (endoderm); Ca, cartilage (mesoderm); Ne, neural rosette-like tissue (ectoderm); P, pigmented neuroectodermal resembling meranocyte (ectoderm); Br, brain-like tissue (ectoderm). Scale bars, 200 µm.</p

Detection of residual undifferentiated cells contained in differentiating cell cultures.

<p>(A) Differentiation scheme of 253G1 cells into MSCs is shown. (B) Expression levels of undifferentiated cell markers (<i>OCT3/4, NANOG</i> and <i>LIN28</i>) in each cell culture were determined using qRT-PCR. Relative mRNA expression levels are presented as ratios to the level of that in 253G1 cells at Day 1. Results are the mean ± SD (n = 3). (C) Numbers of the forming colonies derived from residual undifferentiated cells in differentiating cell culture at Day 6 or Day 14 are shown. Experiments were carried out in duplicate. Data are present as raw data in each well (shown by plots) or the mean of well 1 and well 2 (shown by bar graphs). (D) Phase contrast images of forming colonies derived from residual undifferentiated cells are shown. Cells at Day 6 of differentiation (EBs) were dissociated into single cells by Accutase and cultured on laminin-521-coated wells in Essential 8 medium (5×10⁴/well). After 4 days of culture, small clusters emerged and then started to grow rapidly. Finally, they formed colonies that were positive for TRA-1-60 (shown by immunofluorescence staining, green). Arrowheads indicate a colony derived from same origin. Scale bars, 500 µm.</p

Detection of hiPSCs spiked into human neurons on the culture system using laminin-521 and Essential 8 medium.

<p>Morphologies of forming colonies derived from 253G1 cells spiked into human neurons are shown (images in the left). 253G1 cells (1%, 1000 cells; 0.1%, 100 cells; 0.01%, 10 cells; 0%, 0 cells) were spiked into human neurons (100,000 cells) and co-cultured on laminin-521-coated wells in 12-well plates in Essential 8 medium for 6 days. Forming colonies were stained with anti TRA-1-60 antibody (images in the right). HNs, human neurons. Scale bars, 500 µm.</p

Robust proliferation of 253G1 cells cultured on laminin-521 in Essential 8 medium.

<p>(A) Morphology of the 253G1 cells expanded on laminin-521 in Essential 8 or mTeSR1 medium after dissociation into single cells. Scale bars, 500 µm. (B) Quantification of the number of dissociated 253G1 cells expanded on laminin-521 or Matrigel in Essential 8 or mTeSR1 medium. Data are presented as the mean ± standard deviation (SD) of three independent experiments (**<i>P</i><0.01, two-way ANOVA followed by Bonferroni t-test as post-hoc test). LN521, laminin-521; MG, Matrigel.</p

Rapid cell proliferation of hiPSCs plated at low cell density on laminin-521 in Essential 8 medium.

<p>(A-I) Quantification of the number of 253G1, 201B7 and 409B2 cells expanded on laminin-521 in Essential 8 or mTeSR1 medium. Cell numbers were counted every 24 h after plating at 3.2×10⁴ cells/cm² (A, D, G), 1.6×10⁴ cells/cm² (B, E, H) and 8.0×10³ cells/cm² (C, F, I), respectively. Data are presented as the mean ± standard deviation (SD) of three independent experiments (*<i>P</i><0.05, **<i>P</i><0.01, *** <i>P</i><0.001, two-way repeated-measures ANOVA followed by a Bonferroni post-hoc test).</p

Detection of hiPSCs spiked into hMSCs on the culture system using laminin-521 and Essential 8 medium.

<p>(A) Morphologies of forming colonies derived from 409B2 cells spiked into hMSCs are shown (images in the left). 409B2 cells (1%, 1000 cells; 0.1%, 100 cells; 0.01%, 10 cells; 0%, 0 cells) were spiked into hMSCs (100,000 cells) and co-cultured on laminin-521-coated wells in 6-well plates in Essential 8 medium for 7 days. Expression of the undifferentiated marker, TRA-1-60, in these colonies was assessed using immunofluorescence staining (images in the right). Each experiment was carried out in duplicate. Scale bars, 500 µm. (B) Numbers of the colonies detected in each spiked sample in (A) are shown. Data are present as raw data in each well (shown by plots) or the mean of well 1 and well 2 (shown by bar graphs). (C) Morphology of a forming colony derived from 253G1 cells spiked into hMSCs at the ratio of 0.001% (6 hiPSCs to 600,000 hMSCs) is shown (images in the left). Mixture of those cells was co-cultured on a 100-mm cell culture dish coated with laminin-521 in Essential 8 medium for 9 days. Forming colony was stained with anti TRA-1-60 antibody (images in the right). Experiment was carried out in duplicate. Scale bars, 500 µm.</p

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<p>The MALAT1 long noncoding RNA is strongly linked to cancer progression. Here we report a MALAT1 function in repressing the promoter of p53 (TP53) tumor suppressor gene. p21 and FAS, well-known p53 targets, were upregulated by MALAT1 knockdown in A549 human lung adenocarcinoma cells. We found that these upregulations were mediated by transcriptional activation of p53 through MALAT1 depletion. In addition, we identified a minimal MALAT1-responsive region in the P1 promoter of p53 gene. Flow cytometry analysis revealed that MALAT1-depleted cells exhibited G1 cell cycle arrest. These results suggest that MALAT1 affects the expression of p53 target genes through repressing p53 promoter activity, leading to influence the cell cycle progression.</p

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<p>The MALAT1 long noncoding RNA is strongly linked to cancer progression. Here we report a MALAT1 function in repressing the promoter of p53 (TP53) tumor suppressor gene. p21 and FAS, well-known p53 targets, were upregulated by MALAT1 knockdown in A549 human lung adenocarcinoma cells. We found that these upregulations were mediated by transcriptional activation of p53 through MALAT1 depletion. In addition, we identified a minimal MALAT1-responsive region in the P1 promoter of p53 gene. Flow cytometry analysis revealed that MALAT1-depleted cells exhibited G1 cell cycle arrest. These results suggest that MALAT1 affects the expression of p53 target genes through repressing p53 promoter activity, leading to influence the cell cycle progression.</p

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<p>The MALAT1 long noncoding RNA is strongly linked to cancer progression. Here we report a MALAT1 function in repressing the promoter of p53 (TP53) tumor suppressor gene. p21 and FAS, well-known p53 targets, were upregulated by MALAT1 knockdown in A549 human lung adenocarcinoma cells. We found that these upregulations were mediated by transcriptional activation of p53 through MALAT1 depletion. In addition, we identified a minimal MALAT1-responsive region in the P1 promoter of p53 gene. Flow cytometry analysis revealed that MALAT1-depleted cells exhibited G1 cell cycle arrest. These results suggest that MALAT1 affects the expression of p53 target genes through repressing p53 promoter activity, leading to influence the cell cycle progression.</p