8 research outputs found
Hydrogen/Deuterium Exchange Mass Spectrometry Provides Insights into the Role of Drosophila Testis-Specific Myosin VI Light Chain AndroCaM
In
Drosophila testis, myosin VI plays a special role, distinct
from its motor function, by anchoring components to the unusual actin-based
structures (cones) that are required for spermatid individualization.
For this, the two calmodulin (CaM) light-chain molecules of myosin
VI are replaced by androcam (ACaM), a related protein with 67% identity
to CaM. Although ACaM has a similar bi-lobed structure to CaM, with
two EF hand-type Ca2+ binding sites per lobe, only one
functional Ca2+ binding site operates in the amino-terminus.
To understand this light chain substitution, we used hydrogen–deuterium
exchange mass spectrometry (HDX-MS) to examine dynamic changes in
ACaM and CaM upon Ca2+ binding and interaction with the
two CaM binding motifs of myosin VI (insert2 and IQ motif). HDX-MS
reveals that binding of Ca2+ to ACaM destabilizes its N-lobe
but stabilizes the entire C-lobe, whereas for CaM, Ca2+ binding induces a pattern of alternating stabilization/destabilization
throughout. The conformation of this stable holo-C-lobe of ACaM seems
to be a “prefigured” version of the conformation adopted
by the holo-C-lobe of CaM for binding to insert2 and the IQ motif
of myosin VI. Strikingly, the interaction of holo-ACaM with either
peptide converts the holo-N-lobe to its Ca2+-free, more
stable, form. Thus, ACaM in vivo should bind the myosin VI light chain
sites in an apo-N-lobe/holo-C-lobe state that cannot fulfill the Ca2+-related functions of holo-CaM required for myosin VI motor
assembly and activity. These findings indicate that inhibition of
myosin VI motor activity is a precondition for transition to an anchoring
function
Additional file 3: of Isoform-specific deletion of PKM2 constrains tumor initiation in a mouse model of soft tissue sarcoma
Figure S3. (A) Representative images of IF for tdTomato, PKM1 or PKM2, and EdU on KP M2 +/+ or KP M2 −/− sarcoma cell lines. (B) Cumulative populaion doublings of KP M2 +/+ or KP M2 −/− sarcoma cell lines, n = 3 KP M2 +/+ cell lines and n = 4 KP M2 −/− cell lines. (C) Sarcoma weight in grams. (JPG 2694 kb
Additional file1: of Isoform-specific deletion of PKM2 constrains tumor initiation in a mouse model of soft tissue sarcoma
Figure S1. Quantification of PKM1 and PKM2 staining intensities shown as percent of tissue cores scored in 16 normal human skeletal muscle samples (A) and 48 primary human rhabdomyosarcomas (B). Score 0 = no staining, Score 1 = weak, Score 2 = positive, or Score 3 = strong. (C) Representative images of IHC for PKM1 and PKM2 in KP mouse sarcoma tissue. Corresponding H&E images are shown. Scale bars, 20 μm. (JPG 1314 kb
Additional file 4: of Isoform-specific deletion of PKM2 constrains tumor initiation in a mouse model of soft tissue sarcoma
Table S1. Raw data for LC-MS metabolomics on KP M2+/+ and KP M2-/- sarcomas. Related to Fig. 5. This table contains all the LC-MS metabolomics data. Includes normalization and statistical analysis for each measured metabolite. (XLSX 140 kb
Enrichment for coding variants amongst autosomal SNPs stratified between South Asians and the 1000 Genome populations (3A) and for specific functional classes of SNPs amongst South Asians compared to Europeans (3B).
<p>Enrichment is calculated compared to null hypothesis; P values are provided in <b>Table S6 and Table S7 in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0102645#pone.0102645.s021" target="_blank">File S1</a></b>.</p
Enrichment for stratified genetic variants at genetic loci associated with respective phenotype in genome-wide association studies.
<p>Inset the correlation between the enrichment for stratified SNPs at known genetic loci, and enrichment of stratified variants for SNPs associated with respective phenotype in genome-wide association studies. Further details are provided in <b>Table S10 in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0102645#pone.0102645.s021" target="_blank">File S1</a></b>.</p
Correlation between imputed and observed genotypes amongst South Asians, using phased or unphased genotypes from low coverage WGS, or using 1000 Genomes Project data.
<p>Results are shown as mean r<sup>2</sup> with genotypes observed from microarray data (<b>2A</b>) or high-coverage WGS (<b>2B</b>, WGS-28x).</p
Location of birth (1A) and principal components analysis (PCA, 1B) of the South Asians sequenced.
<p>The PCA plots shows results for all South Asians in the LOLIPOP study (SA - All, red circles), for South Asians sequenced (SA - NGS, black dots) and for HapMap2 populations.</p