Additional file 3: Table S2. of Insertion and deletion polymorphisms of the ancient AluS family in the human genome

Polymorphic AluS insertion candidates (n = 11). (XLSX 17 kb

Additional file 5: Figure S2. of Insertion and deletion polymorphisms of the ancient AluS family in the human genome

Functionally significant Alu sequence features annotated in TPRT insertion candidates (n = 7). (PDF 203 kb

Additional file 4: Table S3. of Insertion and deletion polymorphisms of the ancient AluS family in the human genome

Sequences of deletion and Alu-containing alleles of AluS deletion polymorphisms (n = 37) [2]. (XLSX 16 kb

Additional file 11: Table S10. of Genome-wide characterization of human L1 antisense promoter-driven transcripts

(excel) Primers used for empirical validation of L1 ASP transcripts. (XLSX 9 kb

Additional file 6: Table S5. of Genome-wide characterization of human L1 antisense promoter-driven transcripts

(excel) Validated Sanger sequences of L1 ASP transcripts L1-KIAA1324L and L1-UVRAG. (XLSX 11 kb

Additional file 2 of A map of mobile DNA insertions in the NCI-60 human cancer cell panel

A map of Alu insertion site positions in the NCI-60 cell panel. Genomic coordinates of TIP-chip peaks are provided. Reference insertions are indicated in column D (hg19), and known polymorphic variants are indicated by a ‘Y’ in column E (Y/N, yes/no). For each cell line in columns G-BN, a ‘1’ indicates that the insertion is present, while ‘0’ indicates that the insertion is not found. (XLSX 380 kb

Additional file 1: Table S1. of Somatic retrotransposition is infrequent in glioblastomas

Sequencing information and statistics. (XLS 33 kb