The use of otolith morphometrics in determining the size and species identification of eight mullets (Mugiliformes: Mugilidae) from Malaysia

Sagittal otolith morphometric measurements from Malaysian Mugilidae species were selected to investigate their possible role in species identification, due to the Mugilidae species’ morphological similarities, and age determination. Fish standard length (cm), otolith length (μm), width (μm) and mass (g) measurements were taken from eight species: Chelon macrolepis, C. melinopterus, C. subviridis, Ellochelon vaigiensis, Moolgarda cunnesius, M. seheli, Mugil cephalus and Valamugil engeli. Otolith aspect ratio, OAS (otolith length divided by width), was calculated and compared between species. The four homogenous groups based on their OAS were C. melinopterus (mean=1.65) and V. engeli (1.66) and M. cunnesius (1.89) and E. vaigiensis (1.89); M. seheli (2.08), C. macrolepis (2.14) and M. cephalus (2.17); and the latter two with C. subviridis (2.43). The relationships between fish standard length and otolith length/mass showed positive correlations for both, with otolith length providing the stronger correlation (rs = 0.897, P < 0.001) than otolith mass (rs = 0.795, P < 0.001). It is concluded that the more morphologically similar species have similar otolith aspect ratios, related to head shape; however, otolith shape is also affected by a variety of other environmental factors that have to be taken account of

Genetic diversity and population structure of terapon jarbua (Forskål, 1775) (teleostei, terapontidae) in malaysian waters

A background study is important for the conservation and stock management of a species. Terapon jarbua is a coastal Indo-Pacific species, sourced for human consumption. This study examined 134 samples from the central west and east coasts of Peninsular (West) Malaysia and East Malaysia. A 1446-bp concatenated dataset of mtDNA COI and Cyt b sequences was used in this study and 83 haplotypes were identified, of which 79 are unique haplotypes and four are shared haplotypes. Populations of T. jarbua in Malaysia are genetically heterogenous as shown by the high level of haplotype diversity ranging from 0.9167–0.9952, low nucleotide diversity ranging from 0.0288–0.3434, and high FST values (within population genetic variation). Population genetic structuring is not distinct as shown by the shared haplotypes between geographic populations and mixtures of haplotypes from different populations within the same genetic cluster. The gene flow patterns and population structuring observed among these regions are likely attributed to geographical distance, past historical events, allopatric speciation, dispersal ability and water currents. For instance, the mixture of haplotypes revealed an extraordinary migration ability of T. jarbua (>1200 km) via ancient river connectivity. The negative overall value of the neutrality test and a non-significant mismatch distribution are consistent with demographic expansion(s) in the past. The median-joining network concurred with the maximum likelihood haplotype tree with three major clades resolved. The scarcity of information on this species is an obstacle for future management and conservation purposes. Hence, this study aims to contribute information on the population structure, genetic diversity, and historical demography of T. jarbua in Malaysia

A new species of the worm-eel genus Neenchelys (Anguilliformes: Ophichthidae) from southern Taiwan

Ho, Hsuan-Ching, Loh, Kar-Hoe (2015): A new species of the worm-eel genus Neenchelys (Anguilliformes: Ophichthidae) from southern Taiwan. Zootaxa 4060 (1), DOI: 10.11646/zootaxa.4060.1.

Notes on the moray eels (Anguilliformes: Muraenidae) of Malaysia with two new records

Two new records of moray eels (Muraenidae), Gymnothorax margaritophorus Bleeker, 1864 and Strophidon sathete (Hamilton 1822), are reported for Malaysia. They are represented by two specimens each, all collected from Sabah waters. The present study also provides the current taxonomic and distributional information of the Malaysian moray eels. To date, there are 33 species belonging to six genera of the Muraenidae in Malaysian waters based on the published records

Gymnothorax melanosomatus, a new moray eel (Teleostei: Anguilliformes: Muraenidae) from southeastern Taiwan

Gymnothorax melanosomatus new species, is described here on the basis of eight specimens collected from eastern coastal Taiwan at a depth 50-180 m. This new moray eel is distinguished from a closely similar species, G. prolatus, by a combination of the following characters: a uniformly black body when fresh (vs. brown), a relatively long preanal length 58.5 % of TL (vs. 48.9), shorter snout length 17.8 % of HL (vs. 20.0), interobital width 12.2 % of HL (vs. 14.3); more preanal vertebrae 105-109 (vs. 74-86) and total vertebrae 201-211 (vs. 174-190). The male and female are not different in body color and pattern, but the numbers of median intermaxillary teeth are different between the sexes, 0 in male and 2-3 in female. Key words

Fully-automated identification of fish species based on otolith contour: using short-time Fourier transform and discriminant analysis (STFT-DA)

Background. Fish species may be identified based on their unique otolith shape or contour. Several pattern recognition methods have been proposed to classify fish species through morphological features of the otolith contours. However, there has been no fully-automated species identification model with the accuracy higher than 80%. The purpose of the current study is to develop a fully-automated model, based on the otolith contours, to identify the fish species with the high classification accuracy. Methods. Images of the right sagittal otoliths of 14 fish species from three families namely Sciaenidae, Ariidae, and Engraulidae were used to develop the proposed identification model. Short-time Fourier transform (STFT) was used, for the first time in the area of otolith shape analysis, to extract important features of the otolith contours. Discriminant Analysis (DA), as a classification technique, was used to train and test the model based on the extracted features. Results. Performance of the model was demonstrated using species from three families separately, as well as all species combined. Overall classification accuracy of the model was greater than 90% for all cases. In addition, effects of STFT variables on the performance of the identification model were explored in this study. Conclusions. Short-time Fourier transform could determine important features of the otolith outlines. The fully-automated model proposed in this study (STFT-DA) could predict species of an unknown specimen with acceptable identification accuracy. The model codes can be accessed at http://mybiodiversityontologies.um.edu.my/Otolith/ and https://peerj.com/preprints/1517/. The current model has flexibility to be used for more species and families in future studies

Pleistocene isolation caused by sea-level fluctuations shaped genetic characterization of Pampus minor over a large-scale geographical distribution

The southern lesser pomfret (Pampus minor) is an economically important fish, and its numbers are declining because of overfishing and environmental pollution. In addition, owing to the similarities of its external morphological characteristics to other species in the genus Pampus, it is often mistaken for grey pomfret (P. cinereus) or silver pomfret (P. argenteus) juveniles. In this study, the genetic diversity and structure of 264 P. minor individuals from 11 populations in China and Malaysia coastal waters were evaluated for the first time, to the best of our knowledge, using mitochondrial cytochrome b fragments. The results showed that P. minor had moderate haplotype diversity and low nucleotide diversity. Furthermore, two divergent lineages were detected within the populations, but the phylogenetic structure corresponded imperfectly with geographical location; thus, the populations may have diverged in different glacial refugia during the Pleistocene low sea levels. Analysis of molecular variation (AMOVA) showed that genetic variation originated primarily from individuals within the population. Pairwise FST results showed significant differentiation between the Chinese and Malaysian populations. Except for the Xiamen population, which was classified as a marginal population, the genetic differentiation among the other Chinese populations was not significant. During the Late Pleistocene, P. minor experienced a population expansion event starting from the South China Sea refugium that expanded outward, and derivative populations quickly occupied and adapted to the new habitat. The results of this study will provide genetic information for the scientific conservation and management of P. minor resources

Plectranthias kamii Randll, 1980 (Perciformes: Serranidae) collected from Bitung, North Sulawesi: first record from the Southwest Pacific Ocean

Three specimens of the serranid fish (Serranidae), Plectranthias kamii Randall, 1980 were collected from fish market, Bitung, North Sulawesi on May and June 2010. Some morphological characters P. kamii is closely related to P. sheni, P. megalophthalmus, P. retrofasciatus, P. rubrifasciatus, P. knappi, P. helenae, P. pelicieri, P. jothyi, P. retrofasciatus and P. randalli in sharing of body width, upper jaw length, pelvic spine length and orbit diameter. Meristic count characters of P. kamii differ from P. sheni, P. pilicieri, P. megalophthalmus, P. retrofasciatus and P. rubrifasciatus in having more numerous dorsal spine (18 vs. 15–17) and below lateral line (33–34 vs. 29–33) and differ from P. megalophthalmus and P. rubrifasciatus in having more numerous pored scales in lateral line (13 vs. 14–15) and shorter of anal spine. The present anthiine fish collected from Bitung, Indonesia was described as new record and bringing the total number of species of this genus known in Indonesia to seven