3,110 research outputs found

    The Phase Diagram of Crystalline Surfaces

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    We report the status of a high-statistics Monte Carlo simulation of non-self-avoiding crystalline surfaces with extrinsic curvature on lattices of size up to 1282128^2 nodes. We impose free boundary conditions. The free energy is a gaussian spring tethering potential together with a normal-normal bending energy. Particular emphasis is given to the behavior of the model in the cold phase where we measure the decay of the normal-normal correlation function.Comment: 9 pages latex (epsf), 4 EPS figures, uuencoded and compressed. Contribution to Lattice '9

    Collapse of Randomly Self-Interacting Polymers

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    We use complete enumeration and Monte Carlo techniques to study self--avoiding walks with random nearest--neighbor interactions described by v0qiqjv_0q_iq_j, where qi=±1q_i=\pm1 is a quenched sequence of ``charges'' on the chain. For equal numbers of positive and negative charges (N+=NN_+=N_-), the polymer with v0>0v_0>0 undergoes a transition from self--avoiding behavior to a compact state at a temperature θ1.2v0\theta\approx1.2v_0. The collapse temperature θ(x)\theta(x) decreases with the asymmetry x=N+N/(N++N)x=|N_+-N_-|/(N_++N_-)Comment: 8 pages, TeX, 4 uuencoded postscript figures, MIT-CMT-

    Theta-point universality of polyampholytes with screened interactions

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    By an efficient algorithm we evaluate exactly the disorder-averaged statistics of globally neutral self-avoiding chains with quenched random charge qi=±1q_i=\pm 1 in monomer i and nearest neighbor interactions qiqj\propto q_i q_j on square (22 monomers) and cubic (16 monomers) lattices. At the theta transition in 2D, radius of gyration, entropic and crossover exponents are well compatible with the universality class of the corresponding transition of homopolymers. Further strong indication of such class comes from direct comparison with the corresponding annealed problem. In 3D classical exponents are recovered. The percentage of charge sequences leading to folding in a unique ground state approaches zero exponentially with the chain length.Comment: 15 REVTEX pages. 4 eps-figures . 1 tabl

    From Collapse to Freezing in Random Heteropolymers

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    We consider a two-letter self-avoiding (square) lattice heteropolymer model of N_H (out ofN) attracting sites. At zero temperature, permanent links are formed leading to collapse structures for any fraction rho_H=N_H/N. The average chain size scales as R = N^{1/d}F(rho_H) (d is space dimension). As rho_H --> 0, F(rho_H) ~ rho_H^z with z={1/d-nu}=-1/4 for d=2. Moreover, for 0 < rho_H < 1, entropy approaches zero as N --> infty (being finite for a homopolymer). An abrupt decrease in entropy occurs at the phase boundary between the swollen (R ~ N^nu) and collapsed region. Scaling arguments predict different regimes depending on the ensemble of crosslinks. Some implications to the protein folding problem are discussed.Comment: 4 pages, Revtex, figs upon request. New interpretation and emphasis. Submitted to Europhys.Let

    Self-consistent variational theory for globules

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    A self-consistent variational theory for globules based on the uniform expansion method is presented. This method, first introduced by Edwards and Singh to estimate the size of a self-avoiding chain, is restricted to a good solvent regime, where two-body repulsion leads to chain swelling. We extend the variational method to a poor solvent regime where the balance between the two-body attractive and the three-body repulsive interactions leads to contraction of the chain to form a globule. By employing the Ginzburg criterion, we recover the correct scaling for the θ\theta-temperature. The introduction of the three-body interaction term in the variational scheme recovers the correct scaling for the two important length scales in the globule - its overall size RR, and the thermal blob size ξT\xi_{T}. Since these two length scales follow very different statistics - Gaussian on length scales ξT\xi_{T}, and space filling on length scale RR - our approach extends the validity of the uniform expansion method to non-uniform contraction rendering it applicable to polymeric systems with attractive interactions. We present one such application by studying the Rayleigh instability of polyelectrolyte globules in poor solvents. At a critical fraction of charged monomers, fcf_c, along the chain backbone, we observe a clear indication of a first-order transition from a globular state at small ff, to a stretched state at large ff; in the intermediate regime the bistable equilibrium between these two states shows the existence of a pearl-necklace structure.Comment: 7 pages, 1 figur

    Triple Products and Yang-Baxter Equation (II): Orthogonal and Symplectic Ternary Systems

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    We generalize the result of the preceeding paper and solve the Yang-Baxter equation in terms of triple systems called orthogonal and symplectic ternary systems. In this way, we found several other new solutions.Comment: 38 page

    Apex Exponents for Polymer--Probe Interactions

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    We consider self-avoiding polymers attached to the tip of an impenetrable probe. The scaling exponents γ1\gamma_1 and γ2\gamma_2, characterizing the number of configurations for the attachment of the polymer by one end, or at its midpoint, vary continuously with the tip's angle. These apex exponents are calculated analytically by ϵ\epsilon-expansion, and numerically by simulations in three dimensions. We find that when the polymer can move through the attachment point, it typically slides to one end; the apex exponents quantify the entropic barrier to threading the eye of the probe

    A Census Of Highly Symmetric Combinatorial Designs

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    As a consequence of the classification of the finite simple groups, it has been possible in recent years to characterize Steiner t-designs, that is t-(v,k,1) designs, mainly for t = 2, admitting groups of automorphisms with sufficiently strong symmetry properties. However, despite the finite simple group classification, for Steiner t-designs with t > 2 most of these characterizations have remained longstanding challenging problems. Especially, the determination of all flag-transitive Steiner t-designs with 2 < t < 7 is of particular interest and has been open for about 40 years (cf. [11, p. 147] and [12, p. 273], but presumably dating back to 1965). The present paper continues the author's work [20, 21, 22] of classifying all flag-transitive Steiner 3-designs and 4-designs. We give a complete classification of all flag-transitive Steiner 5-designs and prove furthermore that there are no non-trivial flag-transitive Steiner 6-designs. Both results rely on the classification of the finite 3-homogeneous permutation groups. Moreover, we survey some of the most general results on highly symmetric Steiner t-designs.Comment: 26 pages; to appear in: "Journal of Algebraic Combinatorics

    Polymer-mediated entropic forces between scale-free objects

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    The number of configurations of a polymer is reduced in the presence of a barrier or an obstacle. The resulting loss of entropy adds a repulsive component to other forces generated by interaction potentials. When the obstructions are scale invariant shapes (such as cones, wedges, lines or planes) the only relevant length scales are the polymer size R_0 and characteristic separations, severely constraining the functional form of entropic forces. Specifically, we consider a polymer (single strand or star) attached to the tip of a cone, at a separation h from a surface (or another cone). At close proximity, such that h<<R_0, separation is the only remaining relevant scale and the entropic force must take the form F=AkT/h. The amplitude A is universal, and can be related to exponents \eta governing the anomalous scaling of polymer correlations in the presence of obstacles. We use analytical, numerical and epsilon-expansion techniques to compute the exponent \eta for a polymer attached to the tip of the cone (with or without an additional plate or cone) for ideal and self-avoiding polymers. The entropic force is of the order of 0.1 pN at 0.1 micron for a single polymer, and can be increased for a star polymer.Comment: LaTeX, 15 pages, 4 eps figure

    Ground States of Two-Dimensional Polyampholytes

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    We perform an exact enumeration study of polymers formed from a (quenched) random sequence of charged monomers ±q0\pm q_0, restricted to a 2-dimensional square lattice. Monomers interact via a logarithmic (Coulomb) interaction. We study the ground state properties of the polymers as a function of their excess charge QQ for all possible charge sequences up to a polymer length N=18. We find that the ground state of the neutral ensemble is compact and its energy extensive and self-averaging. The addition of small excess charge causes an expansion of the ground state with the monomer density depending only on QQ. In an annealed ensemble the ground state is fully stretched for any excess charge Q>0Q>0.Comment: 6 pages, 6 eps figures, RevTex, Submitted to Phys. Rev.
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