Equation of state in 2+1 flavor QCD with improved Wilson quarks by the fixed scale approach

We study the equation of state in 2+1 flavor QCD with nonperturbatively improved Wilson quarks coupled with the RG-improved Iwasaki glue. We apply the $T$-integration method to nonperturbatively calculate the equation of state by the fixed-scale approach. With the fixed-scale approach, we can purely vary the temperature on a line of constant physics without changing the system size and renormalization constants. Unlike the conventional fixed-$N_t$ approach, it is easy to keep scaling violations small at low temperature in the fixed scale approach. We study 2+1 flavor QCD at light quark mass corresponding to $m_\pi/m_\rho \simeq 0.63$, while the strange quark mass is chosen around the physical point. Although the light quark masses are heavier than the physical values yet, our equation of state is roughly consistent with recent results with highly improved staggered quarks at large $N_t$.Comment: 14 pages, 12 figures, v2: Table I and Figure 3 are corrected, reference updated. Main discussions and conclusions are unchanged, v3: version to appear in PRD, v4: reference adde

Temporal patterns of gene expression via nonmetric multidimensional scaling analysis

Motivation: Microarray experiments result in large scale data sets that require extensive mining and refining to extract useful information. We have been developing an efficient novel algorithm for nonmetric multidimensional scaling (nMDS) analysis for very large data sets as a maximally unsupervised data mining device. We wish to demonstrate its usefulness in the context of bioinformatics. In our motivation is also an aim to demonstrate that intrinsically nonlinear methods are generally advantageous in data mining. Results: The Pearson correlation distance measure is used to indicate the dissimilarity of the gene activities in transcriptional response of cell cycle-synchronized human fibroblasts to serum [Iyer et al., Science vol. 283, p83 (1999)]. These dissimilarity data have been analyzed with our nMDS algorithm to produce an almost circular arrangement of the genes. The temporal expression patterns of the genes rotate along this circular arrangement. If an appropriate preparation procedure may be applied to the original data set, linear methods such as the principal component analysis (PCA) could achieve reasonable results, but without data preprocessing linear methods such as PCA cannot achieve a useful picture. Furthermore, even with an appropriate data preprocessing, the outcomes of linear procedures are not as clearcut as those by nMDS without preprocessing.Comment: 11 pages, 6 figures + online only 2 color figures, submitted to Bioinformatic

Histograms in heavy-quark QCD at finite temperature and density

We study the phase structure of lattice QCD with heavy quarks at finite temperature and density by a histogram method. We determine the location of the critical point at which the first-order deconfining transition in the heavy-quark limit turns into a crossover at intermediate quark masses through a change of the shape of the histogram under variation of coupling parameters. We estimate the effect of the complex phase factor which causes the sign problem at finite density, and show that, in heavy-quark QCD, the effect is small around the critical point. We determine the critical surface in 2+1 flavor QCD in the heavy-quark region at all values of the chemical potential mu including mu=infty.Comment: 26 pages, 21 figures, 1 tabl

An application of the variational analysis to calculate the meson spectral functions

We present a new method to calculate meson spectral functions (SPFs) on the lattice based on a variational method. Because, on a finite volume lattice, the meson SPFs have discrete spectra only, a suitable way to extract such discrete signals is needed. Using a variational method, we can calculate several discrete quantities such as the position and the area of spectral peaks for low-lying states. Moreover data accuracy can be improved by increasing the number of basis functions. In this report, we first confirm our method in the free quark case and show that our method works well. Then, we apply the method to a quenched lattice QCD simulation and calculate the charmonium SPFs for S and P-waves at zero temperature. Our results for the ground state are well consistent with the position and the area of the lowest peaks of charmonium SPFs calculated by the conventional maximum entropy method. For first excited states, the signals may be reliablly extracted with our method because the charmonium mass converges to a value close to the experimental one when the number of basis functions is increased. We also investigate the SPFs for S-wave charmonia at below and above $T_c$. Our results suggest that $J/\psi$ and $\eta_c$ may survive up to 1.4$T_c$.Comment: 7 Pages, 6 figures, talk presented at the XXVIII International Symposium on Lattice Field Theory, June 14-19 2010, Villasimius, Ital

Application of fixed scale approach to static quark free energies in quenched and 2+1 flavor lattice QCD with improved Wilson quark action

Free energies between static quarks and Debye screening masses in the quark-gluon plasma are studied on the basis of Polyakov-line correlations in lattice simulations of 2+1 flavors QCD with the renormalization-group improved gluon action and the $O(a)$-improved Wilson quark action. We perform simulations at $m_{\rm PS}/m_{\rm V} = 0.63$ (0.74) for light (strange) flavors with lattice sizes of $32^3 \times N_t$ with $N_t=4$--12. We adopt the fixed-scale approach, where temperature can be varied without changing the spatial volume and renormalization factor. We find that, at short distance, the free energies of static quarks in color-singlet channel converge to the static-quark potential evaluated from the Wilson-loop at zero-temperature, in accordance with the expected insensitivity of short distance physics to the temperature. At long distance, the free energies of static quarks approach to twice the single-quark free energies, implying that the interaction between static quarks is fully screened. The screening properties can be well described by the screened Coulomb form with appropriate Casimir factor at high temperature. We also discuss a limitation of the fixed-scale approach at high temperature.Comment: 16 pages, 14 figure