12 research outputs found
BiomTable_MiSeq_Pferschy-Wenzig_et_al_2017.xlsx
<p>Text-formatted biom table of MiSeq sequencing data produced in the study published as:</p><p>Pferschy-Wenzig, E-M, Koskinen, K, Moissl-Eichinger, C, Bauer, R.
</p><p><b>A combined LC-MS metabolomics- and 16S rRNA sequencing
platform to assess interactions between herbal medicinal products and human gut
bacteria <i>in vitro</i>: A pilot study on
willow bark extract" </b></p><p><b>in Frontiers in Pharmacology, 2017. doi: 10.3389/fphar.2017.00893</b></p><p><br></p
Rarefaction analysis of the microbial communities at the different sampling points.
<p>Curves were calculated by MOTHUR with a 3% distance cutoff.</p
Representative sampling sites in the cave.
<p>A) Calcite raft deposit at Chaos (SO1); B) moonmilk deposit at Piredda Hall (SO2 & SO3); C) manganese oxide deposit at Water Tower site (SO6) and D) sampling of a limestone wall at location Shaft (SO4)</p
Water chemical parameters from representative areas in the cave.
<p>SI<sub>calcite</sub> was calculated using the Merlak algorithm [<a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0180700#pone.0180700.ref037" target="_blank">37</a>].</p
Venn diagram showing the number of core, unique and shared species among the different sampling points.
<p>Due to the presence of human contaminations, SO1 and SO2 have been omitted. SO6 has been omitted due to the almost sole presence of Proteobacteria.</p
Relative class abundance of A) the whole cave and B) separated into the different sampling sites.
<p>Phylogenetic groups accounting for ≤ 5% of all classified sequences are summarized in the artificial group “others” (Part B). Full relative class abundance is given in Supplementary <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0180700#pone.0180700.t003" target="_blank">Table 3</a>.</p
Impact of human exploration on the microbial diversity in a hypogean system.
<p>The most abundant human associated genera (as previously described by The Human Microbiome Project Consortium) were used for this analysis and include <i>Lactobacillus</i>, <i>Propionibacterium</i>, <i>Streptococcus</i>, <i>Bacteroides</i>, <i>Corynebacterium</i>, <i>Staphylococcus</i>, <i>Moraxella</i>, <i>Haemophilus</i>, <i>Prevotella</i>, and <i>Veillonella</i>.</p
Chemical composition (XRF) of the predominant cave sediments.
<p>Chemical composition (XRF) of the predominant cave sediments.</p
Bacterial and archaeal 16S rRNA gene diversity analyses of samples obtained from the Su Bentu Cave in Sardinia.
<p>Bacterial and archaeal 16S rRNA gene diversity analyses of samples obtained from the Su Bentu Cave in Sardinia.</p
Additional file 15: Figure S5. of Microbial biodiversity assessment of the European Space Agency’s ExoMars 2016 mission
Network analysis of samples taken in September 2013. (TIFF 9424Ă‚Â kb