25 research outputs found
Phase-Locked Signals Elucidate Circuit Architecture of an Oscillatory Pathway
This paper introduces the concept of phase-locking analysis of oscillatory cellular signaling systems to elucidate biochemical circuit architecture. Phase-locking is a physical phenomenon that refers to a response mode in which system output is synchronized to a periodic stimulus; in some instances, the number of responses can be fewer than the number of inputs, indicative of skipped beats. While the observation of phase-locking alone is largely independent of detailed mechanism, we find that the properties of phase-locking are useful for discriminating circuit architectures because they reflect not only the activation but also the recovery characteristics of biochemical circuits. Here, this principle is demonstrated for analysis of a G-protein coupled receptor system, the M3 muscarinic receptor-calcium signaling pathway, using microfluidic-mediated periodic chemical stimulation of the M3 receptor with carbachol and real-time imaging of resulting calcium transients. Using this approach we uncovered the potential importance of basal IP3 production, a finding that has important implications on calcium response fidelity to periodic stimulation. Based upon our analysis, we also negated the notion that the Gq-PLC interaction is switch-like, which has a strong influence upon how extracellular signals are filtered and interpreted downstream. Phase-locking analysis is a new and useful tool for model revision and mechanism elucidation; the method complements conventional genetic and chemical tools for analysis of cellular signaling circuitry and should be broadly applicable to other oscillatory pathways
Glutamate regulation of calcium and IP3 oscillating and pulsating dynamics in astrocytes
Recent years have witnessed an increasing interest in neuron-glia
communication. This interest stems from the realization that glia participates
in cognitive functions and information processing and is involved in many brain
disorders and neurodegenerative diseases. An important process in neuron-glia
communications is astrocyte encoding of synaptic information transfer: the
modulation of intracellular calcium dynamics in astrocytes in response to
synaptic activity. Here, we derive and investigate a concise mathematical model
for glutamate-induced astrocytic intracellular Ca2+ dynamics that captures the
essential biochemical features of the regulatory pathway of inositol
1,4,5-trisphosphate (IP3). Starting from the well-known two-state Li-Rinzel
model for calcium-induced-calcium release, we incorporate the regulation of the
IP3 production and phosphorylation. Doing so we extended it to a three-state
model (referred as the G-ChI model), that could account for Ca2+ oscillations
triggered by endogenous IP3 metabolism as well as by IP3 production by external
glutamate signals. Compared to previous similar models, our three-state models
include a more realistic description of the IP3 production and degradation
pathways, lumping together their essential nonlinearities within a concise
formulation. Using bifurcation analysis and time simulations, we demonstrate
the existence of new putative dynamical features. The cross-couplings between
IP3 and Ca2+ pathways endows the system with self-consistent oscillator
properties and favor mixed frequency-amplitude encoding modes over pure
amplitude modulation ones. These and additional results of our model are in
general agreement with available experimental data and may have important
implications on the role of astrocytes in the synaptic transfer of information.Comment: 42 pages, 16 figures, 1 table. Figure filenames mirror figure order
in the paper. Ending "S" in figure filenames stands for "Supplementary
Figure". This article was selected by the Faculty of 1000 Biology: "Genevieve
Dupont: Faculty of 1000 Biology, 4 Sep 2009" at
http://www.f1000biology.com/article/id/1163674/evaluatio