Metastatic Ureteral Involvement of Non-Small Cell Lung Cancer

Metastases from a variety of malignant tumors can involve the ureters, but ureteral involvement by lung cancer is extremely rare and usually described at autopsy. We report a rare case of a 76-year-old man who presented with a three-month history of right flank dullness and was noted to have a nonhomogeneous retroperitoneal mass with hydronephrosis of the right kidney on computed tomography of the abdomen. Computed tomography of the thorax showed a nodule in the lower lobe, measuring 3 × 2 cm, in the right lung. After excluding the presence of other primary tumors and metastases, we reached a final diagnosis of solitary retroperitoneal metastasis of adenocarcinoma of the lung. Although rare, in patients of non-small cell lung cancer, presence of hydronephrosis should alert the physician to the possibility of metastasis

Magnetic Properties and Paleomagnetism of Zebra Rock, Western Australia: Chemical Remanence Acquisition in Hematite Pigment and Ediacaran Geomagnetic Field Behavior

Zebra Rock, a decorative stone remarkable for its unusual pattern of regularly spaced reddish bands and rods with white background, is found within the Neoproterozoic succession in East Kimberley, Western Australia. The unusual pigment distribution suggests that precipitation of hematite, or its precursor phase, occurred in a single episode. Magnetic properties of hematite pigment in Zebra Rock are distinctly different from those of the host shale, with a smaller median particle size and higher degree of structural perfection. The low thermal stability of the Zebra Rock pigment, with onset of thermal alteration at 300°C, suggests that the rocks have not undergone significant metamorphic heating. Stepwise thermal demagnetization reveals multiple magnetization components. Short-range variability in the relative contributions of the components to the total remanence is indicative of the stochastic nature of the hematite pigment growth process. In addition to seven magnetization components with shallow to intermediate inclinations that can be matched to the Paleozoic Australian apparent polar wander path, Zebra Rock samples contain a distinct steeply dipping magnetization that is not observed in the host shales. The steep magnetization appears to be primary, based on its unique association with the Zebra pattern, dissimilarity with younger directions, and evidence for low degree of thermal alteration of the rocks. The steep characteristic remanence contrasts with previous paleomagnetic indications of low Australian Neoproterozoic paleolatitudes. The characteristic Zebra Rock magnetization is the first Australian example of incompatible magnetization directions that have been reported previously from Ediacaran rocks in Laurentia, Baltica, and Africa.We acknowledge the Australian Research Council (ARC) through grant FS100100076 to APR and colleagues that provided a Super Science Fellowship to AA

Low-temperature magnetic properties of pelagic carbonates: Oxidation of biogenic magnetite and identification of magnetosome chains

Pelagic marine carbonates provide important records of past environmental change. We carried out detailed low-temperature magnetic measurements on biogenic magnetite-bearing sediments from the Southern Ocean (Ocean Drilling Program (ODP) Holes 738B, 738C

Influence of Early Low-Temperature and Later High-Temperature Diagenesis on Magnetic Mineral Assemblages in Marine Sediments From the Nankai Trough

Funding Information: This research used samples and data provided by the International Ocean Discovery Program (IODP). The authors thank the Marine Works Japan staff at the Kochi Core Center for support during sampling. This work was supported by the Japan Society for the Promotion of Science Grant-in-Aid for Science Research (grant 17K05681 to Myriam Kars), the German Research Foundation (DFG grants 388260220 to Male Koster and Susann Henkel, and 408178672 to Florence Schubotz), and the Australian Research Council (grant DP200100765 to Andrew P. Roberts). The authors also thank two anonymous reviewers for their constructive comments and Editor Joshua Feinberg for handling the manuscript.Peer reviewedPublisher PD

Asian monsoon modulation of nonsteady state diagenesis in hemipelagic marine sediments offshore of Japan

We have identified millennial-scale variations in magnetic mineral diagenesis from Pacific Ocean sediments offshore of Japan that we correlate with changes in organic carbon burial that were likely driven by Asian monsoon fluctuations. The correlation was determined by identifying offsets between the positions of fossil diagenetic fronts and climatically induced variations in organic carbon burial inferred from magnetic and geochemical analyses. Episodes of intense monsoon activity and attendant sediment magnetic mineral diagenesis also appear to correlate with Heinrich events, which supports the existence of climatic telecommunications between Asia and the North Atlantic region. Several lines of evidence support our conclusions: (1) fluctuations in down-core magnetic properties and diagenetic pyrite precipitation are approximately coeval; (2) localized stratigraphic intervals with relatively stronger magnetic mineral dissolution are linked to enhanced sedimentary organic carbon contents that gave rise to nonsteady state diagenesis; (3) down-core variations in elemental S content provide a proxy for nonsteady state diagenesis that correlate with key records of Asian monsoon variations; and (4) relict titanomagnetite that is preserved as inclusions within silicate particles, rather than secondary authigenic phases (e.g., greigite), dominates the strongly diagenetically altered sediment intervals and are protected against sulfidic dissolution. We suggest that such millennial-scale environmental modulation of nonsteady state diagenesis (that creates a temporal diagenetic filter and relict magnetic mineral signatures) is likely to be common in organic-rich hemipelagic sedimentary settings with rapidly varying depositional conditions. Our work also demonstrates the usefulness of magnetic mineral inclusions for recording important environmental magnetic signal

Pressure effect on magnetic hysteresis parameters of single-domain magnetite contained in natural plagioclase crystal

金沢大学理工研究域地球社会基盤学系This study investigates pressure effects on the magnetic properties of non-interacting singledomain (SD) magnetite. Using a high-pressure cell specially designed for a Magnetic Property Measurement System, magnetic hysteresis measurements were conducted under high pressures of up to 1 GPa on natural plagioclase crystals containing much acicular SD magnetite. Coercivity and saturation magnetization were nearly constant with pressure, while saturation remanent magnetization and coercivity of remanence decreased with pressure at moderate rates of -8 per cent GPa-1 and -18 per cent GPa-1, respectively. These results suggest that temperature effects govern the magnetic behaviour of acicular SD magnetite grains in the middle and lower crusts. © The Authors 2015

Development of an experimental platform for combinative use of an XFEL and a high-power nanosecond laser

We developed an experimental platform for combinative use of an X-ray free electron laser (XFEL) and a high-power nanosecond laser. The main target of the platform is an investigation of matter under high-pressure states produced by a laser-shock compression. In this paper, we show details of the experimental platform, including XFEL parameters and the focusing optics, the laser irradiation system and X-ray diagnostics. As a demonstration of the high-power laser-pump XFEL-probe experiment, we performed an X-ray diffraction measurement. An in-situ single-shot X-ray diffraction pattern expands to a large angle side, which shows a corundum was compressed by laser irradiation.Inubushi, Y.; Yabuuchi, T.; Togashi, T.; Sueda, K.; Miyanishi, K.; Tange, Y.; Ozaki, N.; Matsuoka, T.; Kodama, R.; Osaka, T.; Matsuyama, S.; Yamauchi, K.; Yumoto, H.; Koyama, T.; Ohashi, H.; Tono, K.; Yabashi, M. Development of an Experimental Platform for Combinative Use of an XFEL and a High-Power Nanosecond Laser. Appl. Sci. 2020, 10, 2224. https://doi.org/10.3390/app10072224

Key challenges in bringing CRISPR-mediated somatic cell therapy into the clinic.

Genome editing using clustered regularly interspersed short palindromic repeats (CRISPR) and CRISPR-associated proteins offers the potential to facilitate safe and effective treatment of genetic diseases refractory to other types of intervention. Here, we identify some of the major challenges for clinicians, regulators, and human research ethics committees in the clinical translation of CRISPR-mediated somatic cell therapy

The whole blood transcriptional regulation landscape in 465 COVID-19 infected samples from Japan COVID-19 Task Force

「コロナ制圧タスクフォース」COVID-19患者由来の血液細胞における遺伝子発現の網羅的解析 --重症度に応じた遺伝子発現の変化には、ヒトゲノム配列の個人差が影響する--. 京都大学プレスリリース. 2022-08-23.Coronavirus disease 2019 (COVID-19) is a recently-emerged infectious disease that has caused millions of deaths, where comprehensive understanding of disease mechanisms is still unestablished. In particular, studies of gene expression dynamics and regulation landscape in COVID-19 infected individuals are limited. Here, we report on a thorough analysis of whole blood RNA-seq data from 465 genotyped samples from the Japan COVID-19 Task Force, including 359 severe and 106 non-severe COVID-19 cases. We discover 1169 putative causal expression quantitative trait loci (eQTLs) including 34 possible colocalizations with biobank fine-mapping results of hematopoietic traits in a Japanese population, 1549 putative causal splice QTLs (sQTLs; e.g. two independent sQTLs at TOR1AIP1), as well as biologically interpretable trans-eQTL examples (e.g., REST and STING1), all fine-mapped at single variant resolution. We perform differential gene expression analysis to elucidate 198 genes with increased expression in severe COVID-19 cases and enriched for innate immune-related functions. Finally, we evaluate the limited but non-zero effect of COVID-19 phenotype on eQTL discovery, and highlight the presence of COVID-19 severity-interaction eQTLs (ieQTLs; e.g., CLEC4C and MYBL2). Our study provides a comprehensive catalog of whole blood regulatory variants in Japanese, as well as a reference for transcriptional landscapes in response to COVID-19 infection

DOCK2 is involved in the host genetics and biology of severe COVID-19

「コロナ制圧タスクフォース」COVID-19疾患感受性遺伝子DOCK2の重症化機序を解明 --アジア最大のバイオレポジトリーでCOVID-19の治療標的を発見--. 京都大学プレスリリース. 2022-08-10.Identifying the host genetic factors underlying severe COVID-19 is an emerging challenge. Here we conducted a genome-wide association study (GWAS) involving 2, 393 cases of COVID-19 in a cohort of Japanese individuals collected during the initial waves of the pandemic, with 3, 289 unaffected controls. We identified a variant on chromosome 5 at 5q35 (rs60200309-A), close to the dedicator of cytokinesis 2 gene (DOCK2), which was associated with severe COVID-19 in patients less than 65 years of age. This risk allele was prevalent in East Asian individuals but rare in Europeans, highlighting the value of genome-wide association studies in non-European populations. RNA-sequencing analysis of 473 bulk peripheral blood samples identified decreased expression of DOCK2 associated with the risk allele in these younger patients. DOCK2 expression was suppressed in patients with severe cases of COVID-19. Single-cell RNA-sequencing analysis (n = 61 individuals) identified cell-type-specific downregulation of DOCK2 and a COVID-19-specific decreasing effect of the risk allele on DOCK2 expression in non-classical monocytes. Immunohistochemistry of lung specimens from patients with severe COVID-19 pneumonia showed suppressed DOCK2 expression. Moreover, inhibition of DOCK2 function with CPYPP increased the severity of pneumonia in a Syrian hamster model of SARS-CoV-2 infection, characterized by weight loss, lung oedema, enhanced viral loads, impaired macrophage recruitment and dysregulated type I interferon responses. We conclude that DOCK2 has an important role in the host immune response to SARS-CoV-2 infection and the development of severe COVID-19, and could be further explored as a potential biomarker and/or therapeutic target