FHY1 Mediates Nuclear Import of the Light-Activated Phytochrome A Photoreceptor

The phytochrome (phy) family of photoreceptors is of crucial importance throughout the life cycle of higher plants. Light-induced nuclear import is required for most phytochrome responses. Nuclear accumulation of phyA is dependent on two related proteins called FHY1 (Far-red elongated HYpocotyl 1) and FHL (FHY1 Like), with FHY1 playing the predominant function. The transcription of FHY1 and FHL are controlled by FHY3 (Far-red elongated HYpocotyl 3) and FAR1 (FAr-red impaired Response 1), a related pair of transcription factors, which thus indirectly control phyA nuclear accumulation. FHY1 and FHL preferentially interact with the light-activated form of phyA, but the mechanism by which they enable photoreceptor accumulation in the nucleus remains unsolved. Sequence comparison of numerous FHY1-related proteins indicates that only the NLS located at the N-terminus and the phyA-interaction domain located at the C-terminus are conserved. We demonstrate that these two parts of FHY1 are sufficient for FHY1 function. phyA nuclear accumulation is inhibited in the presence of high levels of FHY1 variants unable to enter the nucleus. Furthermore, nuclear accumulation of phyA becomes light- and FHY1-independent when an NLS sequence is fused to phyA, strongly suggesting that FHY1 mediates nuclear import of light-activated phyA. In accordance with this idea, FHY1 and FHY3 become functionally dispensable in seedlings expressing a constitutively nuclear version of phyA. Our data suggest that the mechanism uncovered in Arabidopsis is conserved in higher plants. Moreover, this mechanism allows us to propose a model explaining why phyA needs a specific nuclear import pathway

Finishing the euchromatic sequence of the human genome

The sequence of the human genome encodes the genetic instructions for human physiology, as well as rich information about human evolution. In 2001, the International Human Genome Sequencing Consortium reported a draft sequence of the euchromatic portion of the human genome. Since then, the international collaboration has worked to convert this draft into a genome sequence with high accuracy and nearly complete coverage. Here, we report the result of this finishing process. The current genome sequence (Build 35) contains 2.85 billion nucleotides interrupted by only 341 gaps. It covers ∼99% of the euchromatic genome and is accurate to an error rate of ∼1 event per 100,000 bases. Many of the remaining euchromatic gaps are associated with segmental duplications and will require focused work with new methods. The near-complete sequence, the first for a vertebrate, greatly improves the precision of biological analyses of the human genome including studies of gene number, birth and death. Notably, the human enome seems to encode only 20,000-25,000 protein-coding genes. The genome sequence reported here should serve as a firm foundation for biomedical research in the decades ahead

Ecological Drivers of and Responses by Arctic Benthic Communities, with an Emphasis on Kongsfjorden, Svalbard

Knowledge on the causes and consequences that structure benthic communities is essential to understand and conserve Arctic ecosystems. This review aims to summarize the current knowledge on the effects of abiotic and biotic factors on species interactions and community traits, i.e. diversity, structure, and functioning of Arctic coastal hard- and soft-bottom habitats, with emphasis on Kongsfjorden (Svalbard). Current evidence indicates that descriptive and mensurative studies on the distribution of species prevail and few studies allow inferences on the underlying processes generating observed patterns. Furthermore, Arctic hard- and soft-bottom communities show some fundamental differences in their ecology. The recovery in hard-bottom communities from disturbance, for instance, takes exceptionally long (i.e. > decadal) due to slow growth and/or sporadic recruitment, while it is considerably shorter in soft-bottom communities. Also, Arctic hard-bottom communities display strong competitive hierarchies that appear negligible in communities populating sedimentary shores. This review concludes with a suggestion to shift the focus in Arctic benthos research from pattern to processes and the identification of major research gaps. These include (i) the apparent demarcation of studies being devoted to either rocky or to sedimentary shores, which hamper studies on habitat connectivity, (ii) the lack of studies addressing the effects of pathogens and diseases on community ecology, and (iii) the incomplete assessment of potentially significant drivers of community ecology, such as trophic interactions, recruitment success, and competition