Controlling Large Molecules at High Repetition Rates: Toward the “Molecular Movie”?

We have exploited electric fields to control the translations and rotations of complex molecules. This allows for the preparation of state-, size-, and structural-isomer selected samples of molecules fixed in space. These are ideal targets for the investigation of chemical reaction dynamics

General variational approach to nuclear-quadrupole coupling in rovibrational spectra of polyatomic molecules

A general algorithm for computing the quadrupole-hyperfine effects in the rovibrational spectra of polyatomic molecules is presented for the case of ammonia (NH$_3$). The method extends the general variational approach TROVE by adding the extra term in the Hamiltonian that describes the nuclear quadrupole coupling, with no inherent limitation on the number of quadrupolar nuclei in a molecule. We applied the new approach to compute the nitrogen-nuclear-quadrupole hyperfine structure in the rovibrational spectrum of NH$_3$. These results agree very well with recent experimental spectroscopic data for the pure rotational transitions in the ground vibrational and $\nu_2$ states, and the rovibrational transitions in the $\nu_1$, $\nu_3$, $2\nu_4$, and $\nu_1+\nu_3$ bands. The computed hyperfine-resolved rovibrational spectrum of ammonia will be beneficial for the assignment of experimental rovibrational spectra, further detection of ammonia in interstellar space, and studies of the proton-to-electron mass variation

High-intracavity-power thin-disk laser for the alignment of molecules

We propose a novel approach for strong alignment of gas-phase molecules for experiments at arbitrary repetition rates. A high-intracavity-power continuous-wave laser will provide the necessary ac electric field of $\!10^{10}$- $10^{11}~\text{W}/\text{cm}^2$. We demonstrate thin-disk lasers based on Yb:YAG and Yb:Lu$_2$O$_3$ in a linear high-finesse resonator providing intracavity power levels in excess of 100~kW at pump power levels on the order of 50~W. The multi-longitudinal-mode operation of this laser avoids spatial-hole burning even in a linear standing-wave resonator. The system will be scaled up as in-vacuum system to allow for the generation of fields of $10^{11}~\text{W}/\text{cm}^2$. This system will be directly applicable for experiments at modern X-ray light sources, such as synchrotrons or free-electron lasers, which operate at various very high repetition rates. This would allow to record molecular movies through temporally resolved diffractive imaging of fixed-in-space molecules, as well as the spectroscopic investigation of combined X-ray-NIR strong-field effects of atomic and molecular systems

Characterizing gas flow from aerosol particle injectors

A novel methodology for measuring gas flow from small orifices or nozzles into vacuum is presented. It utilizes a high-intensity femtosecond laser pulse to create a plasma within the gas plume produced by the nozzle, which is imaged by a microscope. Calibration of the imaging system allows for the extraction of absolute number densities. We show detection down to helium densities of $4\times10^{16}$~cm$^{-3}$ with a spatial resolution of a few micrometer. The technique is used to characterize the gas flow from a convergent-nozzle aerosol injector [Struct.\ Dyn.~2, 041717 (2015)] as used in single-particle diffractive imaging experiments at free-electron laser sources. Based on the measured gas-density profile we estimate the scattering background signal under typical operating conditions of single-particle imaging experiments and estimate that fewer than 50 photons per shot can be expected on the detector

Alternating-Gradient Focusing of the Benzonitrile-Argon Van der Waals Complex

We report on the focusing and guiding of the van der Waals complex formed between benzonitrile molecules (C$_6$H$_5$CN) and argon atoms in a cold molecular beam using an ac electric quadrupole guide. The distribution of quantum states in the guided beam is non-thermal, because the transmission efficiency depends on the state-dependent effective dipole moment in the applied electric fields. At a specific ac frequency, however, the excitation spectrum can be described by a thermal distribution at a rotational temperature of 0.8 K. From the observed transmission characteristics and a combination of trajectory and Stark-energy calculations we conclude that the permanent electric dipole moment of benzonitrile remains unchanged upon the attachment of the argon atom to within \pm5%. By exploiting the different dipole-moment-to-mass (\mu/m) ratios of the complex and the benzonitrile monomer, transmission can be selectively suppressed for or, in the limit of 0 K rotational temperature, restricted to the complex.Comment: to be published in JC

Variations in Proteins Dielectric Constants

Using a new semi-empirical method for calculating molecular polarizabilities and the Clausius−Mossotti relation, we calculated the static dielectric constants of dry proteins for all structures in the protein data bank (PDB). The mean dielectric constant of more than 150,000 proteins is (Formula presented.) with a standard deviation of 0.04, which agrees well with previous measurement for dry proteins. The small standard deviation results from the strong correlation between the molecular polarizability and the volume of the proteins. We note that non-amino acid cofactors such as Chlorophyll may alter the dielectric environment significantly. Furthermore, our model shows anisotropies of the dielectric constant within the same molecule according to the constituents amino acids and cofactors. Finally, by changing the amino acid protonation states, we show that a change of pH does not have a significant effect on the dielectric constants of proteins

Optimizing aerodynamic lenses for single-particle imaging

A numerical simulation infrastructure capable of calculating the flow of gas and the trajectories of particles through an aerodynamic lens injector is presented. The simulations increase the fundamental understanding and predict optimized injection geometries and parameters. Our simulation results were compared to previous reports and also validated against experimental data for 500 nm polystyrene spheres from an aerosol-beam- characterization setup. The simulations yielded a detailed understanding of the radial phase-space distribution and highlighted weaknesses of current aerosol injectors for single-particle diffractive imaging. With the aid of these simulations we developed new experimental implementations to overcome current limitations

Electron gun for diffraction experiments off controlled molecules

A dc electron gun, generating picosecond pulses with up to $8\times10^{6}$ electrons per pulse, was developed. Its applicability for future time-resolved-diffraction experiments on state- and conformer-selected laser-aligned or oriented gaseous samples was characterized. The focusing electrodes were arranged in a velocity-map imaging spectrometer configuration. This allowed to directly measure the spatial and velocity distributions of the electron pulses emitted from the cathode. The coherence length and pulse duration of the electron beam were characterized by these measurements combined with electron trajectory simulations. Electron diffraction data off a thin aluminum foil illustrated the coherence and resolution of the electron-gun setup