Mapping Root-Zone Soil Moisture Using a Temperature–Vegetation Triangle Approach with an Unmanned Aerial System: Incorporating Surface Roughness from Structure from Motion

High resolution root-zone soil moisture (SM) maps are important for understanding the spatial variability of water availability in agriculture, ecosystems research and water resources management. Unmanned Aerial Systems (UAS) can flexibly monitor land surfaces with thermal and optical imagery at very high spatial resolution (meter level, VHR) for most weather conditions. We modified the temperature⁻vegetation triangle approach to transfer it from satellite to UAS remote sensing. To consider the effects of the limited coverage of UAS mapping, theoretical dry/wet edges were introduced. The new method was tested on a bioenergy willow short rotation coppice site during growing seasons of 2016 and 2017. We demonstrated that by incorporating surface roughness parameters from the structure-from-motion in the interpretation of the measured land surface-atmosphere temperature gradients, the estimates of SM significantly improved. The correlation coefficient between estimated and measured SM increased from not significant to 0.69 and the root mean square deviation decreased from 0.045 m3∙m−3 to 0.025 m3∙m−3 when considering temporal dynamics of surface roughness in the approach. The estimated SM correlated better with in-situ root-zone SM (15⁻30 cm) than with surface SM (0⁻5 cm) which is an important advantage over alternative remote sensing methods to estimate SM. The optimal spatial resolution of the triangle approach was found to be around 1.5 m, i.e. similar to the length scale of tree-crowns. This study highlights the importance of considering the 3-D fine scale canopy structure, when addressing the links between surface temperature and SM patterns via surface energy balances. Our methodology can be applied to operationally monitor VHR root-zone SM from UAS in agricultural and natural ecosystems

Hyperspectral reflectance measurements from UAS under intermittent clouds: Correcting irradiance measurements for sensor tilt

One great advantage of optical hyperspectral remote sensing from unmanned aerial systems (UAS) compared to satellite missions is the possibility to fly and collect data below clouds. The most typical scenario is flying below intermittent clouds and under turbulent conditions, which causes tilting of the platform. This study aims to advance hyperspectral imaging from UAS in most weather conditions by addressing two challenges: (i) the radiometric and spectral calibrations of miniaturized hyperspectral sensors; and (ii) tilting effects on measured downwelling irradiance. We developed a novel method to correct the downwelling irradiance data for tilting effects. It uses a hybrid approach of minimizing measured irradiance variations for constant irradiance periods and spectral unmixing, to calculate the spectral diffuse irradiance fraction for all irradiance measurements within a flight. It only requires the platform's attitude data and a standard incoming light sensor. We demonstrated the method at the Palo Verde National Park wetlands in Costa Rica, a highly biodiverse area. Our results showed that the downwelling irradiance correction method reduced systematic shifts caused by a change in flight direction of the UAS, by 87% and achieving a deviation of 2.78% relative to a on ground reference in terms of broadband irradiance. High frequency (< 3 s) irradiance variations caused by high-frequency tilting movements of the UAS were reduced by up to 71%. Our complete spectral and radiometric calibration and irradiance correction can significantly remove typical striped illumination artifacts in the surface reflectance-factor map product. The possibility of collecting precise hyperspectral reflectance-factor data from UAS under varying cloud cover makes it more operational for environmental monitoring or precision agriculture applications, being an important step in advancing hyperspectral imaging from UAS.Innovation Fund Denmark/[7048-00001B]/IFD/DinamarcaAgricultural Water Innovations in the Tropics/[]/AgWIT/CanadáUniversidad de Costa Rica/[805-C0-603]/UCR/Costa RicaUCR::Vicerrectoría de Docencia::Ciencias Básicas::Facultad de Ciencias::Escuela de Físic

Hyperspectral and Thermal Sensing of Stomatal Conductance, Transpiration, and Photosynthesis for Soybean and Maize under Drought

During water stress, crops undertake adjustments in functional, structural, and biochemical traits. Hyperspectral data and machine learning techniques (PLS-R) can be used to assess water stress responses in plant physiology. In this study, we investigated the potential of hyperspectral optical (VNIR) measurements supplemented with thermal remote sensing and canopy height (hc) to detect changes in leaf physiology of soybean (C₃) and maize (C₄ ) plants under three levels of soil moisture in controlled environmental conditions. We measured canopy evapotranspiration (ET), leaf transpiration (Tr), leaf stomatal conductance (gs), leaf photosynthesis (A), leaf chlorophyll content and morphological properties (hc and LAI), as well as vegetation cover reflectance and radiometric temperature (TL,Rad). Our results showed that water stress caused significant ET decreases in both crops. This reduction was linked to tighter stomatal control for soybean plants, whereas LAI changes were the primary control on maize ET. Spectral vegetation indices (VIs) and TL,Rad were able to track these different responses to drought, but only after controlling for confounding changes in phenology. PLS-R modeling of gs, Tr, and A using hyperspectral data was more accurate when pooling data from both crops together rather than individually. Nonetheless, separated PLS-R crop models are useful to identify the most relevant variables in each crop such as TL,Rad for soybean and hc for maize under our experimental conditions. Interestingly, the most important spectral bands sensitive to drought, derived from PLS-R analysis, were not exactly centered at the same wavelengths of the studied VIs sensitive to drought, highlighting the benefit of having contiguous narrow spectral bands to predict leaf physiology and suggesting different wavelength combinations based on crop type. Our results are only a first but a promising step towards larger scale remote sensing applications (e.g., airborne and satellite). PLS-R estimates of leaf physiology could help to parameterize canopy level GPP or ET models and to identify different photosynthetic paths or the degree of stomatal closure in response to drought.Science, Faculty ofNon UBCResources, Environment and Sustainability (IRES), Institute forReviewedFacult