Backbone resonance assignments of the monomeric DUF59 domain of human Fam96a

Proteins containing a domain of unknown function 59 (DUF59) appear to have a variety of physiological functions, ranging from iron-sulfur cluster assembly to DNA repair. DUF59 proteins have been found in bacteria, archaea and eukaryotes, however Fam96a and Fam96b are the only mammalian proteins predicted to contain a DUF59 domain. Fam96a is an 18 kDa protein comprised primarily of a DUF59 domain (residues 31-157) and an N-terminal signal peptide (residues 1-27). Interestingly, the DUF59 domain of Fam96a exists as monomeric and dimeric forms in solution, and X-ray crystallography studies of both forms unexpectedly revealed two different domain-swapped dimer structures. Here we report the backbone resonance assignments and secondary structure of the monomeric form of the 127 residue DUF59 domain of human Fam96a. This study provides the basis for further understanding the structural variability exhibited by Fam96a and the mechanism for domain swapping

Metabolic responses of plankton to warming during different productive seasons in coastal Mediterranean waters revealed by in situ mesocosm experiments

International audienceThe response of coastal lagoon plankton communities to warming was studied during two in situ mesocosm experiments in spring and fall of 2018 in the Mediterranean. Phytoplankton biomass, gross primary production (GPP), community respiration (R), phytoplankton growth (µ), and loss (l) rates were estimated using high-frequency chlorophyll-a fluorescence and dissolved oxygen sensors, and daily sampling was used to evaluate the nutrient status and phytoplankton pigment functional groups. Warming strongly depressed the dominant phytoplankton functional groups, mainly the prymnesiophytes, diatoms (spring), and green flagellates (fall). It favored minor groups such as the dinoflagellates (spring) and diatoms (fall). In spring, warming depressed GPP and R by half; however, µ (+ 18%) and l (+ 37%) were enhanced. In contrast, both GPP and µ were enhanced by 21% and 28%, respectively, in fall, and no effects were observed for R and l. Warming strongly decreased phytoplankton biomass and oxygen production in spring, and enhanced them, to a lesser extent, in fall. This led to an overall loss of production over both seasons. This study improves understanding of the contrasting effects of warming during two productive seasons, which depend on plankton community composition and interactions between components and environmental conditions

Le réchauffement désavantage le phytoplancton au profit des bactéries pendant une efflorescence printanière dans la lagune de Thau en Méditerranée

International audienceTo assess the response of a natural plankton community to the future scenario of a warming of +3°C predicted for coastal Mediterranean regions, an in situ mesocosm experiment was carried out over 19 days in a Mediterranean coastal lagoon in 2018. During this experiment, a phytoplankton bloom occurred and the abundances of several cytometric groups of phytoplankton (cyanobacteria, picophytoplankton and nanophytoplankton) and bacteria (low- and high-nucleic acid bacteria), as well as their growth and grazing mortality rates and their carbon biomass, were studied over the course of the experiment. Experimental warming led to a significant reduction of 47% of the phytoplankton biomass in average, based on Chl-a concentrations. This reduction was also observed for nanophytoplankton abundances during the whole experiment and for eukaryotic picophytoplankton only during the bloom period. This result coincided with a significant decrease in orthophosphate concentrations under warming during the prebloom and bloom periods simultaneous to an increase in bacterial abundances. At the same time, the higher growth rates of bacteria and the lower ones of phytoplankton observed at the beginning of the bloom could suggest that competition between phytoplankton and bacteria for orthophosphate might have contributed to the phytoplankton biomass decrease under warming. In addition, higher grazing mortality rates of phytoplankton groups under warming, notably nanophytoplankton at the end of the bloom and in postbloom (by 59 to 626%), as well as eukaryotic picophytoplankton over the course of the experiment (by 58 to 255%) could also have contributed to the lower phytoplankton biomass under warming. Based on these results, estimations of average phytoplankton carbon biomass production and transfer showed reductions of 42 and 45%, respectively, under warming, whereas those of bacteria were enhanced by 13 and 8%, respectively. These results indicated that warming induced a shift at the base of the microbial food web, going toward a more bacteria-based system. This suggested that under future warming scenarios, the microbial food web could become less productive and could negatively affect the functioning of the whole food web in coastal waters

Effects of experimental warming on small phytoplankton, bacteria and viruses in autumn in the Mediterranean coastal Thau Lagoon

International audienceTo investigate the responses of a natural microbial plankton community of coastal Mediterranean waters to warming, which are still poorly known, an in situ mesocosm experiment was carried out in Thau Lagoon during autumn 2018. Several microorganisms, including virio-, bacterio-, and phytoplankton \ 10 lm in size, were monitored daily and analysed using flow cytometry for 19 consecutive days in six mesocosms. Three mesocosms (control) had the same natural water temperature as the lagoon, and the other three were warmed by ? 3°C in relation to the control temperature. The cytometric analyses revealed an unexpected community dominated by picophytoplanktonic cells, including Prochlorococcus-like and Picochlorum-like cells, which had not previously been found in Thau Lagoon. The experimental warming treatment increased the abundances of nanophytoplankton, cyanobacteria, bacteria and viruses during the experiment and triggered earlier blooms of cyanobacteria and picoeukaryotes. Only the abundance of Picochlorum-like cells was significantly reduced under warmer conditions. The growth and Handling Editor: Télesphore Sime-Ngando

Effects of experimental warming on small phytoplankton, bacteria and viruses in autumn in the Mediterranean coastal Thau Lagoon

To investigate the responses of a natural microbial plankton community of coastal Mediterranean waters to warming, which are still poorly known, an in situ mesocosm experiment was carried out in Thau Lagoon during autumn 2018. Several microorganisms, including virio-, bacterio-, and phytoplankton < 10 µm in size, were monitored daily and analysed using flow cytometry for 19 consecutive days in six mesocosms. Three mesocosms (control) had the same natural water temperature as the lagoon, and the other three were warmed by + 3 °C in relation to the control temperature. The cytometric analyses revealed an unexpected community dominated by picophytoplanktonic cells, including Prochlorococcus-like and Picochlorum-like cells, which had not previously been found in Thau Lagoon. The experimental warming treatment increased the abundances of nanophytoplankton, cyanobacteria, bacteria and viruses during the experiment and triggered earlier blooms of cyanobacteria and picoeukaryotes. Only the abundance of Picochlorum-like cells was significantly reduced under warmer conditions. The growth and grazing rates of phytoplankton and bacterioplankton estimated on days 2 and 8 showed that warming enhanced the growth rates of most phytoplankton groups, while it reduced those of bacteria. Surprisingly, warming decreased grazing on phytoplankton and bacteria at the beginning of the experiment, while during the middle of the experiment it decreased the grazing on prokaryote only but increased it for eukaryotes. These results reveal that warming affected the Thau Lagoon plankton community from viruses to nanophytoplankton in fall, inducing changes in both dynamics and metabolic rates

Simultaneous Study of the Growth and Grazing Mortality Rates of Microbial Food Web Components in a Mediterranean Coastal Lagoon

The abundances of 17 cytometric groups encompassing four groups of bacteria, three groups of cyanobacteria, six groups of eukaryotic picophytoplankton ( 1, suggesting that predators efficiently grazed and transferred these preys. Surprisingly, the observed variations in predator abundance across seasons did not necessarily correspond with changes in grazing pressure. The significant positive relationship found between water temperature and bacterial grazing mortality rates and the reverse trend observed for larger eukaryotic prey suggested that warmer water increases small prokaryote transfer to higher trophic levels but disadvantages larger eukaryotic prey transfer

Effects of an experimental terrestrial runoff on the components of the plankton food web in a Mediterranean coastal lagoon

The Mediterranean region is undergoing an increase in the frequency and intensity of extreme rainfall events, resulting in terrestrial runoffs that can affect aquatic environments in coastal regions. The goal of this study was to investigate the effects of terrestrial runoff on natural coastal planktonic assemblages. For this purpose, an in situ mesocosm experiment was conducted in May 2021 in the Mediterranean Thau Lagoon. A terrestrial runoff event was simulated in duplicate mesocosms by adding natural forest soil that was left to maturate naturally for two weeks in river water. After the addition of maturated soil, the abundance and diversity within the planktonic food web, from viruses to metazooplankton, were monitored for 18 days. The addition of maturated soil to the terrestrial runoff treatment greatly depressed the light availability in the mesocosms and potentially enhanced flocculation and sedimentation in the mesocosms, resulting in an immediate negative effect on phytoplankton, decreasing the chlorophyll-a (Chl-a) concentration by 70% for 12 days. Afterward, remineralized nutrient in the terrestrial runoff treatment induced a subsequent positive effect on phytoplankton, which resulted in a diatom bloom and an increase in picophytoplankton and cyanobacteria abundance toward the end of the experiment. Overall, the Chl-a concentration was 30% lower in the terrestrial runoff treatment over the 18 days of experiment, whereas bacteria were 15% more abundant than in the control. This suggests that over the course of the experiment, the addition of maturated soil favoured bacteria instead of phytoplankton at the base of the planktonic food web. The addition of the maturated soil was detrimental for all protozooplankton groups and mixotrophic dinoflagellates, but seemed to favour metazooplankton, notably mollusk larvae, copepod nauplii, and rotifers. This implies that in the terrestrial runoff treatment, the preferential pathway for biomass transfer was through the direct consumption of bacteria and/or phytoplankton by metazooplankton. Therefore, in Thau Lagoon, after a terrestrial runoff, the transfer of biomass within the planktonic food web would potentially be more efficient by promoting direct transfer from the base to the top of the food web, subsiding intermediate trophic levels such as protozooplankton

Simulated terrestrial runoff shifts the metabolic balance of a coastal Mediterranean plankton community towards heterotrophy

Climate change is projected to increase the frequency and intensity of extreme rainfall events in the Mediterranean region, increasing runoffs of terrestrial matter into coastal waters. To evaluate the consequences of terrestrial runoff for plankton key processes, an in situ mesocosm experiment was conducted for 18 d in the spring of 2021 in the coastal Mediterranean Thau Lagoon. Terrestrial runoff was simulated in replicate mesocosms by adding soil from an adjacent oak forest that had matured in water from the main tributary river of the lagoon. Automated high-frequency monitoring of dissolved oxygen, chlorophyll a fluorescence, salinity, light, and temperature was combined with manual sampling of organic and inorganic nutrient pools, pH, carbonate chemistry, and maximum quantum yield (Fv:Fm) of photosystem II (PSII). High-frequency data were used to estimate the gross primary production (GPP) of oxygen, community respiration (CR), and phytoplankton growth (μ) and loss (L) rates. During the first half of the experiment (d2–d11), the simulated runoff reduced light availability (−52 %), chlorophyll a concentrations (−70 %), and phytoplankton growth rates (−53 %). However, phytoplankton maintained a certain level of primary production by increasing its photosynthetic efficiency. Meanwhile, the runoff enhanced CR (+53 %), shifting the metabolic status (GPP : CR) of the system toward heterotrophy and increasing the partial pressure of carbon dioxide (pCO2), potentially switching the direction of the air–sea CO2 exchange. However, during the second part of the experiment (d11–d17), remineralized nutrients boosted phytoplankton growth (+299 %) in the terrestrial runoff treatment but not its loss rates, leading to phytoplankton biomass accumulation and suggesting a mismatch between phytoplankton and its predators. Our study showed that a simulated terrestrial runoff significantly affected key plankton processes, suggesting that climate-change-related increases in runoff frequency and intensity can shift the metabolic balance of Mediterranean coastal lagoons towards heterotrophy

Simulated terrestrial runoff shifts the metabolic balance of a coastal Mediterranean plankton community towards heterotrophy

International audienceClimate change is projected to increase the frequency and intensity of extreme rainfall events in the Mediterranean region, increasing runoffs of terrestrial matter into coastal waters. To evaluate the consequences of terrestrial runoff for plankton key processes, an in situ mesocosm experiment was conducted for 18 d in the spring of 2021 in the coastal Mediterranean Thau Lagoon. Terrestrial runoff was simulated in replicate mesocosms by adding soil from an adjacent oak forest that had matured in water from the main tributary river of the lagoon. Automated high-frequency monitoring of dissolved oxygen, chlorophyll a fluorescence, salinity, light, and temperature was combined with manual sampling of organic and inorganic nutrient pools, pH, carbonate chemistry, and maximum quantum yield (Fv:Fm) of photosystem II (PSII). High-frequency data were used to estimate the gross primary production (GPP) of oxygen, community respiration (CR), and phytoplankton growth (μ) and loss (L) rates. During the first half of the experiment (d2–d11), the simulated runoff reduced light availability (−52 %), chlorophyll a concentrations (−70 %), and phytoplankton growth rates (−53 %). However, phytoplankton maintained a certain level of primary production by increasing its photosynthetic efficiency. Meanwhile, the runoff enhanced CR (+53 %), shifting the metabolic status (GPP : CR) of the system toward heterotrophy and increasing the partial pressure of carbon dioxide (pCO2), potentially switching the direction of the air–sea CO2 exchange. However, during the second part of the experiment (d11–d17), remineralized nutrients boosted phytoplankton growth (+299 %) in the terrestrial runoff treatment but not its loss rates, leading to phytoplankton biomass accumulation and suggesting a mismatch between phytoplankton and its predators. Our study showed that a simulated terrestrial runoff significantly affected key plankton processes, suggesting that climate-change-related increases in runoff frequency and intensity can shift the metabolic balance of Mediterranean coastal lagoons towards heterotrophy