Ejection dynamics of a ring polymer out of a nanochannel

We investigate the ejection dynamics of a ring polymer out of a cylindrical nanochannel using both theoretical analysis and three dimensional Langevin dynamics simulations. The ejection dynamics for ring polymers shows two regimes like for linear polymers, depending on the relative length of the chain compared with the channel. For long chains with length $N$ larger than the critical chain length $N_{c}$, at which the chain just fully occupies the nanochannel, the ejection for ring polymers is faster compared with linear chains of identical length due to a larger entropic pulling force; while for short chains ($N<N_c$), it takes longer time for ring polymers to eject out of the channel due to a longer distance to be diffused to reach the exit of the channel before experiencing the entropic pulling force. These results can help understand many biological processes, such as bacterial chromosome segregation.Comment: 8 pages, 10 figures. To appear in Soft Matte

Association between ecological risks and ecosystem services in an urban agglomeration in arid China

Rapid urbanization leads to changes in ecosystem services and may exacerbate ecological risks. Clarifying the relationship between these two factors in a specific context is essential to explore the integrated management model and achieve sustainable regional development. However, previous studies mainly lack an integrated analysis, fail to clearly explain the mechanism of ecosystem change, and can neither support landscape ecological security construction nor spatial planning and management. This study, using the urban agglomeration on the northern slope of the Tianshan Mountains (UANSTM) as an example, applied multi-source data from 2010 to 2020, investigated the changes and relationships between ecological risks and ecosystem services, and proposes an assessment framework. The total ecosystem services (TES) of the studied agglomeration showed a decreasing trend, with an overall loss of 0.43%. Corresponding to the decrease of ecosystem services, the ecological risk was higher in the south and north of the UANSTM and lower in the northwestern, central, and eastern regions. The proportion of ecological high-risk areas was expanding. The key to the relationship between ecological risks and ecosystem services is the change in hydrological conditions. Therefore, we suggest that the UANSTM actively transforms the development and use mode of water resources and coordinates their allocation, aiming to reduce regional ecological risks and optimize the pattern of ecosystem services

Assessment and Prediction of Landscape Ecological Risk from Land Use Change in Xinjiang, China

Land use change has significant impacts on the regional and global environment; thus, in-depth research on the associated ecological risks is necessary for promoting ecological restoration and sustainable development. Xinjiang, China, is characterized by a fragile ecological environment, and this study aimed to predict the land use change in the region in 2030 under different scenarios, including natural development, ecological conservation, and urban development, by using the PLUS model based on land use data from 2000, 2010, and 2020. Based on the landscape structure of regional ecosystems, we developed a comprehensive ecological risk assessment framework by utilizing a combination of landscape disturbance index, vulnerability index, and loss index. This framework allowed us to evaluate the spatiotemporal patterns and variations of landscape ecological risks under different scenarios in 2030. The study results indicate the following: (1) During the period from 2000 to 2020, the primary landscape type in Xinjiang was unused land. However, significant changes were observed in the area of cultivated land, mainly due to the conversion of grassland and construction land. The expansion of construction land during the urbanization process resulted in a decline in ecological landscapes, such as grassland, thereby weakening the ecosystem’s stability. (2) Under different simulation scenarios, the urban development scenario primarily led to the conversion of unused land into construction land, which is beneficial for economic development. On the other hand, the ecological conservation scenario resulted in a modest increase in construction land and a transformation of unused land into forest and grassland, which aligns with the principles of sustainable development. (3) Different scenarios in 2030 result in varying degrees of changes in each landscape type in Xinjiang, with the spatial distribution characteristics of landscape ecological risks remaining similar to those observed in 2020. Notably, under the urban development scenario, the area of lowest and medium risk areas decreases significantly while the area of higher and highest risk areas increases substantially. Conversely, under the ecological conservation scenario, the area of the lowest risk areas experiences a more significant increase. (4) Overall, the spatial differences in the ecological risk of Xinjiang’s landscape are significant, with HH and LL clustering types predominating and presenting a polarization pattern. The distribution pattern is low in the north and high in the central and southern parts of the study area

Erratum to: Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition) (Autophagy, 12, 1, 1-222, 10.1080/15548627.2015.1100356

non present

Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)

In 2008, we published the first set of guidelines for standardizing research in autophagy. Since then, this topic has received increasing attention, and many scientists have entered the field. Our knowledge base and relevant new technologies have also been expanding. Thus, it is important to formulate on a regular basis updated guidelines for monitoring autophagy in different organisms. Despite numerous reviews, there continues to be confusion regarding acceptable methods to evaluate autophagy, especially in multicellular eukaryotes. Here, we present a set of guidelines for investigators to select and interpret methods to examine autophagy and related processes, and for reviewers to provide realistic and reasonable critiques of reports that are focused on these processes. These guidelines are not meant to be a dogmatic set of rules, because the appropriateness of any assay largely depends on the question being asked and the system being used. Moreover, no individual assay is perfect for every situation, calling for the use of multiple techniques to properly monitor autophagy in each experimental setting. Finally, several core components of the autophagy machinery have been implicated in distinct autophagic processes (canonical and noncanonical autophagy), implying that genetic approaches to block autophagy should rely on targeting two or more autophagy-related genes that ideally participate in distinct steps of the pathway. Along similar lines, because multiple proteins involved in autophagy also regulate other cellular pathways including apoptosis, not all of them can be used as a specific marker for bona fide autophagic responses. Here, we critically discuss current methods of assessing autophagy and the information they can, or cannot, provide. Our ultimate goal is to encourage intellectual and technical innovation in the field