The dynamics of loop formation in a semiflexible polymer

The dynamics of loop formation by linear polymer chains has been a topic of several theoretical/experimental studies. Formation of loops and their opening are key processes in many important biological processes. Loop formation in flexible chains has been extensively studied by many groups. However, in the more realistic case of semiflexible polymers, not much results are available. In a recent study (K. P. Santo and K. L. Sebastian, Phys. Rev. E, \textbf{73}, 031293 (2006)), we investigated opening dynamics of semiflexible loops in the short chain limit and presented results for opening rates as a function of the length of the chain. We presented an approximate model for a semiflexible polymer in the rod limit, based on a semiclassical expansion of the bending energy of the chain. The model provided an easy way to describe the dynamics. In this paper, using this model, we investigate the reverse process, i.e., the loop formation dynamics of a semiflexible polymer chain by describing the process as a diffusion-controlled reaction. We perform a detailed multidimensional analysis of the problem and calculate closing times for a semiflexible chain which leads to results that are physically expected. Such a multidimensional analysis leading to these results does not seem to exist in the literature so far.Comment: 37 pages 4 figure

Photoinduced magnetic bound state in itinerant correlated electron system with spin-state degree of freedom

Photo-excited state in correlated electron system with spin-state degree of freedom is studied. We start from the two-orbital extended Hubbard model where energy difference between the two orbitals is introduced. Photo-excited metastable state is examined based on the effective model Hamiltonian derived by the two-orbital Hubbard model. Spin-state change is induced by photo-irradiation in the low-spin band insulator near the phase boundary. High-spin state is stabilized by creating a ferromagnetic bound state with photo-doped hole carriers. An optical absorption occurs between the bonding and antibonding orbitals inside of the bound state. Time-evolution for photo-excited states is simulated in the time-dependent mean-field scheme. Pair-annihilations of the photo-doped electron and hole generate the high-spin state in a low-spin band insulator. We propose that this process is directly observed by the time-resolved photoemission experiments.Comment: 15 pages, 16 figure

Mobility Increases the Data Offloading Ratio in D2D Caching Networks

Caching at mobile devices, accompanied by device-to-device (D2D) communications, is one promising technique to accommodate the exponentially increasing mobile data traffic. While most previous works ignored user mobility, there are some recent works taking it into account. However, the duration of user contact times has been ignored, making it difficult to explicitly characterize the effect of mobility. In this paper, we adopt the alternating renewal process to model the duration of both the contact and inter-contact times, and investigate how the caching performance is affected by mobility. The data offloading ratio, i.e., the proportion of requested data that can be delivered via D2D links, is taken as the performance metric. We first approximate the distribution of the communication time for a given user by beta distribution through moment matching. With this approximation, an accurate expression of the data offloading ratio is derived. For the homogeneous case where the average contact and inter-contact times of different user pairs are identical, we prove that the data offloading ratio increases with the user moving speed, assuming that the transmission rate remains the same. Simulation results are provided to show the accuracy of the approximate result, and also validate the effect of user mobility.Comment: 6 pages, 5 figures, accepted to IEEE Int. Conf. Commun. (ICC), Paris, France, May 201

4p states and X-Ray Spectroscopy

The 4p states in transition metals and their compounds usually play minor roles on their physical quantities. Recent development of resonant x-ray scattering (RXS) at the K-edge of transition metals, however, casts light on the 4p states, because the signals on orbital and magnetic superlattice spots are brought about by the modulation in the 4p states. The 4p states are extending in solids and thereby sensitive to electronic states at neighboring sites. This characteristic determines the mechanism of RXS that the intensity on the orbital superlattice spots are mainly generated by the lattice distortion and those on magnetic superlattice spots by the coupling of the 4p states with the orbital polarization in the 3d states at neighboring sites. Taking up typical examples for orbital and magnetic RXS, we demonstrate these mechanisms on the basis of the band structure calculation. Finally, we study the MCD spectra at the K-edge, demonstrating that the same mechanism as the magnetic RXS is working.Comment: 9 pages, 9 figures, submitted to Physica Scripta (comment

ELAV links paused Pol II to alternative polyadenylation in the Drosophila nervious system

Alternative polyadenylation (APA) has been implicated in a variety of developmental and disease processes. A particularly dramatic form of APA occurs in the developing nervous system of flies and mammals, whereby various developmental genes undergo coordinate 3' UTR extension. In Drosophila, the RNA-binding protein ELAV inhibits RNA processing at proximal polyadenylation sites, thereby fostering the formation of exceptionally long 3' UTRs. Here, we present evidence that paused Pol II promotes recruitment of ELAV to extended genes. Replacing promoters of extended genes with heterologous promoters blocks normal 3' extension in the nervous system, while extension-associated promoters can induce 3' extension in ectopic tissues expressing ELAV. Computational analyses suggest that promoter regions of extended genes tend to contain paused Pol II and associated cis-regulatory elements such as GAGA. ChIP-seq assays identify ELAV in the promoter regions of extended genes. Our study provides evidence for a regulatory link between promoter-proximal pausing and APA

A second phase transition and superconductivity in the beta-pyrochlore oxide KOs2O6

Another phase transition that is probably of first order is found in the beta-pyrochlore oxide superconductor KOs2O6 with a superconducting transition temperature Tc of 9.6 K. It takes place at Tp=7.5 K in the superconducting state in a zero magnetic field. By applying magnetic fields of up to 140 kOe, the Tc gradually decreased to 5.2 K, while Tp changed little, eventually breaking through the Hc2 line at approximately 65 kOe in the H-T diagram. Both the normal-state resistivity and Hc2 change slightly but significantly across the second phase transition. It is suggested that the transition is associated with the rattling of potassium ions located in an oversized cage of osmium and oxide ions.Comment: 10 pages including 6 figures; to be published in the Proceedings of HFM2006(J. Phys.: Condens. Matter

Comparison of Magnetic Flux Distribution between a Coronal Hole and a Quiet Region

Employing Big Bear Solar Observatory (BBSO) deep magnetograms and H${\alpha}$ images in a quiet region and a coronal hole, observed on September 14 and 16, 2004, respectively, we have explored the magnetic flux emergence, disappearance and distribution in the two regions. The following results are obtained: (1) The evolution of magnetic flux in the quiet region is much faster than that in the coronal hole, as the flux appeared in the form of ephemeral regions in the quiet region is 4.3 times as large as that in the coronal hole, and the flux disappeared in the form of flux cancellation, 2.9 times as fast as in the coronal hole. (2) More magnetic elements with opposite polarities in the quiet region are connected by arch filaments, estimating from magnetograms and H${\alpha}$ images. (3) We measured the magnetic flux of about 1000 magnetic elements in each observing region. The flux distribution of network and intranetwork (IN) elements is similar in both polarities in the quiet region. For network fields in the coronal hole, the number of negative elements is much more than that of positive elements. However for the IN fields, the number of positive elements is much more than that of negative elements. (4) In the coronal hole, the fraction of negative flux change obviously with different threshold flux density. 73% of the magnetic fields with flux density larger than 2 Gauss is negative polarity, and 95% of the magnetic fields is negative, if we only measure the fields with their flux density larger than 20 Gauss. Our results display that in a coronal hole, stronger fields is occupied by one predominant polarity; however the majority of weaker fields, occupied by the other polarity