calculate_GeneTranscript_density.pl

This Perl program takes a tab separated file holding gene transcript starting and ending locations as input and calculates the number of transcripts on both DNA strands at specific bin sizes along chromosomes. Additional information regarding the use of the program can be found at the top of the file

calculate_G4_density.pl

This Perl program takes a tab separated file holding G4 starting and ending locations as input and calculates the number of G4 on both DNA strands at specific bin sizes along chromosomes. Additional information regarding the use of the program can be found at the top of the file. <br

calculate_HBS_density.pl

This Perl program takes a tab separated file holding histone binding site starting and ending locations as input and calculates the number of sites at specific bin sizes along chromosomes. Additional information regarding the use of the program can be found at the top of the file