Crystal metamorphosis at stress extremes: how soft phonons turn into lattice defects

r The Author(s) 2016 At 0 K, phonon instability controls the ideal strength and the ultrafast dynamics of defect nucleation in perfect crystals under high stress. However, how a soft phonon evolves into a lattice defect is still unclear. Here, we develop a full-Brillouin zone soft-phonon-searching algorithm that shows outstanding accuracy and efficiency for pinpointing general phonon instability within the joint material-reciprocal (x–k) spaces. By combining finite-element modeling with embedded phonon algorithm and atomistic simulation, we show how a zone-boundary soft phonon is first triggered in a simple metal (aluminum) under nanoindentation, subsequently leading to a transient new crystal phase and ensuing nucleation of a deformation twin with only one-half of the transformation strain of the conventional twin. We propose a two-stage mechanism governing the transformation of unstable shortwave phonons into lattice defects, which is fundamentally different from that initially triggered by soft long-wavelength phonons. The uncovered material dynamics at stress extremes reveal deep connections between delocalized phonons and localized defects trapped by the full nonlinear potential energy landscape and add to the rich repertoire of nonlinear dynamics found in nature.National Natural Science Foundation of China (Grant No. 50971090)National Natural Science Foundation of China (Grant No. 51071101)National Natural Science Foundation of China (Grant No. 51471107)National Science Foundation (U.S.). Division of Materials Research (DMR-410636

Considerable MHC Diversity Suggests That the Functional Extinction of Baiji Is Not Related to Population Genetic Collapse

To further extend our understanding of the mechanism causing the current nearly extinct status of the baiji (Lipotes vexillifer), one of the most critically endangered species in the world, genetic diversity at the major histocompatibility complex (MHC) class II DRB locus was investigated in the baiji. Nine highly divergent DRB alleles were identified in 17 samples, with an average of 28.4 (13.2%) nucleotide difference and 16.7 (23.5%) amino acid difference between alleles. The unexpectedly high levels of DRB allelic diversity in the baiji may partly be attributable to its evolutionary adaptations to the freshwater environment which is regarded to have a higher parasite diversity compared to the marine environment. In addition, balancing selection was found to be the main mechanisms in generating sequence diversity at baiji DRB gene. Considerable sequence variation at the adaptive MHC genes despite of significant loss of neutral genetic variation in baiji genome might suggest that intense selection has overpowered random genetic drift as the main evolutionary forces, which further suggested that the critically endangered or nearly extinct status of the baiji is not an outcome of genetic collapse

The mTOR Pathway Independent Function of NPRL2 in the Regulation of S-Phase DNA Damage Response

https://openworks.mdanderson.org/sumexp22/1070/thumbnail.jp

ARID1A Deficiency Impairs the DNA Damage Checkpoint and Sensitizes Cells to PARP Inhibitors

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