23 research outputs found

    Genomic, Pathway Network, and Immunologic Features Distinguishing Squamous Carcinomas

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    This integrated, multiplatform PanCancer Atlas study co-mapped and identified distinguishing molecular features of squamous cell carcinomas (SCCs) from five sites associated with smokin

    Data and analyses of woody restoration planting survival and growth as a function of wild ungulate herbivory

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    These data and analyses support the research article “Wild ungulate herbivory suppresses deciduous woody plant establishment following salmonid stream restoration” Averett et al. (2017) [1]. The data and analyses presented here include: (1) planting density, survival and growth (two years post restoration) of riparian plantings along an ~11 km stream reach in northeastern Oregon as a function of herbivory treatment (protected/not protected from wild ungulate herbivory), habitat type, and planting species; and (2) abundance and height distributions of naturally occurring deciduous woody species along the restored stream reach two years post restoration. Survival and growth analyses are provided as output from multiple logistic and mixed effect regression models respectively

    Vegetation change over seven years in the largest protected Pacific Northwest Bunchgrass Prairie remnant.

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    Temperate grasslands are one of the most altered ecosystems on Earth. Consequently, conservation of important characteristics of such ecosystems (e.g., biodiversity) is uncertain even within grasslands that have been protected. Invasion by non-native plants is considered a primary threat to intact grasslands. Here, we evaluated native and non-native vegetation composition change over seven years in the largest Pacific Northwest Bunchgrass remnant. We sampled 124 permanent plots across the Zumwalt Prairie Preserve (northeastern Oregon, USA) twice, seven years apart. With data collected from three grassland community types (xeric prairie, mesic prairie, old fields), we asked: (1) how has species composition changed over time; (2) which species showed the greatest changes in abundance; and (3) how did abundance of Ventenata dubia (the most abundant non-native species) relate to patterns of native and non-native plant abundance? Vegetation composition changed in all three plant communities. Ventenata dubia, an annual non-native grass: (1) became the third most dominant species across the study area; (2) was the only non-native that increased in abundance substantially in all three communities; and (3) was negatively related to native perennial forb cover. Relative cover of non-native species decreased in old fields concomitant with increases in native bunchgrass (Festuca idahoensis) and V. dubia cover. Increased cover of native perennial grasses and non-native annual grasses in old fields were associated with loss of bare ground, but not with reductions in non-native perennial grass cover. Native species dominated in the mesic prairie; however, non-native cover (particularly V. dubia) increased (mean cover increased from 3 to 10%) while mean native perennial forb cover decreased (from 30 to 25%) over time. Continued shifts towards non-native annual grass dominance coupled with potentially declining native perennial forbs, may challenge conservation efforts in one of the last large tracts of Pacific Northwest Bunchgrass Prairie

    Non-Native Plant Invasion along Elevation and Canopy Closure Gradients in a Middle Rocky Mountain Ecosystem.

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    Mountain environments are currently among the ecosystems least invaded by non-native species; however, mountains are increasingly under threat of non-native plant invasion. The slow pace of exotic plant invasions in mountain ecosystems is likely due to a combination of low anthropogenic disturbances, low propagule supply, and extreme/steep environmental gradients. The importance of any one of these factors is debated and likely ecosystem dependent. We evaluated the importance of various correlates of plant invasions in the Wallowa Mountain Range of northeastern Oregon and explored whether non-native species distributions differed from native species along an elevation gradient. Vascular plant communities were sampled in summer 2012 along three mountain roads. Transects (n = 20) were evenly stratified by elevation (~70 m intervals) along each road. Vascular plant species abundances and environmental parameters were measured. We used indicator species analysis to identify habitat affinities for non-native species. Plots were ordinated in species space, joint plots and non-parametric multiplicative regression were used to relate species and community variation to environmental variables. Non-native species richness decreased continuously with increasing elevation. In contrast, native species richness displayed a unimodal distribution with maximum richness occurring at mid-elevations. Species composition was strongly related to elevation and canopy openness. Overlays of trait and environmental factors onto non-metric multidimensional ordinations identified the montane-subalpine community transition and over-story canopy closure exceeding 60% as potential barriers to non-native species establishment. Unlike native species, non-native species showed little evidence for high-elevation or closed-canopy specialization. These data suggest that non-native plants currently found in the Wallowa Mountains are dependent on open canopies and disturbance for establishment in low and mid elevations. Current management objectives including restoration to more open canopies in dry Rocky Mountain forests, may increase immigration pressure of non-native plants from lower elevations into the montane and subalpine zones

    NPMR generated elevation and canopy openness ranges for species (n = 141) included in NMS ordination.

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    <p>Species were ranked by their optima (points) along the elevation and canopy openness gradients. Lines connect between lower (2.5<sup>th</sup> percentile) and upper (97.5<sup>th</sup> percentile) range boundaries. ABLA (<i>Abies lasiocarpa</i>), ARAC2 (<i>Arenaria aculeata</i>), BRAR5 (<i>Bromus arvensis</i>), GOOB2 (<i>Goodyera oblongifolia</i>), RUAC3 (<i>Rumex acetosella</i>), SPRU (<i>Spergularia rubra</i>), TALA2 (<i>Taraxacum laevigatum</i>), VIOR (<i>Viola orbiculata</i>).</p

    NPMR generated ordination Axes 1 and 2 ranges for species (n = 141) included in NMS ordination.

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    <p>Species were ranked by their optima (points) along each axis. Lines connect between lower (2.5<sup>th</sup> percentile) and upper (97.5<sup>th</sup> percentile) range boundaries. ABLA (<i>Abies lasiocarpa</i>), VASC (<i>Vaccinium scoparium</i>), SPRU (<i>Spergularia rubra</i>), RUAC3 (<i>Rumex acetosella</i>), CLUN2 (<i>Clintonia uniflora</i>) PIPO (<i>Pinus ponderosa</i>), PLLA (<i>Plantago lanceolata</i>), TALA2 (<i>Taraxacum laevigatum</i>).</p
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