On the effect of the East/Japan Sea SST variability on the North Pacific atmospheric circulation in a regional climate model

Author Posting. © American Geophysical Union, 2014. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Atmospheres 119 (2014): 418–444, doi:10.1002/2013JD020523.The East/Japan Sea (EJS) is a semi-enclosed marginal sea located in the upstream of the North Pacific storm track, where the leading modes of wintertime interannual variability in sea surface temperature (SST) are characterized by the basin-wide warming-cooling and the northeast-southwest dipole. Processes leading to local and remote atmospheric responses to these SST anomalies are investigated using the Weather Research and Forecast (WRF) model. The atmosphere in direct contact with anomalous diabatic forcing exhibits a linear and symmetric response with respect to the sign, pattern, and magnitude of SST anomalies, producing increased (decreased) wind speed and precipitation response over warm (cold) SSTs. This local response is due to modulation of both the vertical stability of the marine atmospheric boundary layer and the adjustment of sea level pressure, although the latter provides a better explanation of the quadrature relationship between SST and wind speed. The linearity in the local response suggests the importance of fine-scale EJS SSTs to predictability of the regional weather and climate variability. The remote circulation response, in contrast, is strongly nonlinear. An intraseasonal equivalent barotropic ridge emerges in the Gulf of Alaska as a common remote response independent of EJS SST anomalies. This downstream blocking response is reinforced by the enhanced storm track variability east of Japan via transient eddy vorticity flux convergence. Strong nonlinearity in remote response implies that detailed EJS SST patterns may not be critical to this downstream ridge response. Overall, results demonstrate a remarkably far-reaching impact of the EJS SSTs on the atmospheric circulation.H.S. gratefully acknowledges the support from the Penzance Endowed Fund in support of Assistant Scientists at WHOI. Y.-O.K. acknowledges NSF Climate and Large-Scale Dynamics program (AGS-1035423). H.S. and Y.-O.K. also thank NASA grant (NNX13AM59G)

Description of the Diadegma fenestrale (Hymenoptera: Ichneumonidae: Campopleginae) Attacking the Potato Tuber Moth, Phthorimaea operculella (Lep.: Gelechiidae) New to Korea

Diadegma fenestrale is known as a parasitoid of the potato tuber moth, Phthorimaea operculella. The potato tuber moth, Phthorimaea operculella (Zeller) is one of the most destructive pest of potatoes. Also, we found this species attacking the diamondback moth, Plutella xylostella (Lepidoptera: Plutellidae). Ratio of parasitism is 20-30% and cocoon of lepidopteran was parasitic ichneumonid species after 3 days. This species and the genus Diadegma are recorded for the first time from Korea. In this paper, description of the parasitoid and photographs of the diagnostic characteristics are provided

Chrysin suppresses lipopolysaccharide-induced cyclooxygenase-2 expression through the inhibition of nuclear factor for IL-6 (NF-IL6) DNA-binding activity

AbstractChrysin is a natural, biologically active compound extracted from many plants, honey and propolis. It possesses potent anti-inflammation, anti-cancer and anti-oxidation properties. The mechanism by which chrysin suppresses COX-2 expression remains poorly understood. In the present report, we investigated the effect of chrysin on the expression of COX-2 in lipopolysaccharide (LPS)-activated Raw 264.7 cells. Chrysin significantly suppressed the LPS-induced COX-2 protein and mRNA expression in a dose-dependent manner. The ability of chrysin to suppress the expression of the COX-2 was investigated using luciferase reporters controlled by various cis-elements in COX-2 promoter region. Mutational analysis and electrophoretic mobility shift assay verified that nuclear factor for IL-6 was identified as responsible for the chrysin-mediated COX-2 downregulation. These results will provide new insights into the anti-inflammatory and anti-carcinogenic properties of chrysin

The fate of North Atlantic Subtropical Mode Water in the FLAME model

Author Posting. © American Meteorological Society, 2014. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 44 (2014): 1354–1371, doi:10.1175/JPO-D-13-0202.1.North Atlantic Subtropical Mode Water, also known as Eighteen Degree Water (EDW), has the potential to store heat anomalies through its seasonal cycle: the water mass is in contact with the atmosphere in winter, isolated from the surface for the rest of the year, and reexposed the following winter. Though there has been recent progress in understanding EDW formation processes, an understanding of the fate of EDW following formation remains nascent. Here, particles are launched within the EDW of an eddy-resolving model, and their fate is tracked as they move away from the formation region. Particles in EDW have an average residence time of ~10 months, they follow the large-scale circulation around the subtropical gyre, and stratification is the dominant criteria governing the exit of particles from EDW. After sinking into the layers beneath EDW, particles are eventually exported to the subpolar gyre. The spreading of particles is consistent with the large-scale potential vorticity field, and there are signs of a possible eddy-driven mean flow in the southern portion of the EDW domain. The authors also show that property anomalies along particle trajectories have an average integral time scale of ~3 months for particles that are in EDW and ~2 months for particles out of EDW. Finally, it is shown that the EDW turnover time for the model in an Eulerian frame (~3 yr) is consistent with the turnover time computed from the Lagrangian particles provided that the effects of exchange between EDW and the surrounding waters are included.The authors are thankful for financial support from the U.S. National Science Foundation for S. F. G., M. S. L., Y.-O. K., and J. J. P.2014-11-0

Year-to-year reoutcropping of Eighteen Degree Water in an eddy-resolving ocean simulation

Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 45 (2015):1189–1204, doi:10.1175/JPO-D-14-0122.1.Winter outcropping of the Eighteen Degree Water (EDW) and its subsequent dispersion are studied using a ° eddy-resolving simulation of the Family of Linked Atlantic Modeling Experiments (FLAME). Outcropped EDW columns in the model simulations are detected in each winter from 1990 to 1999, and particles are deployed in the center of each outcropped EDW column. Subsequently, the trajectories of these particles are calculated for the following 5 yr. The particles slowly spread away from the outcropping region into the nonoutcropping/subducted EDW region south of ~30°N and eventually to the non-EDW region in the greater subtropical gyre. Approximately 30% of the particles are found in non-EDW waters 1 yr after deployment; after 5 yr, only 25% of the particles are found within EDW. The reoutcropping time is defined as the number of years between when a particle is originally deployed in an outcropping EDW column and when that particle is next found in an outcropping EDW column. Of the particles, 66% are found to reoutcrop as EDW in 1 yr, and less than 5% of the particles outcrop in each of the subsequent 4 yr. While the individual trajectories exhibit significant eddy-like motions, the time scale of reoutcropping is primarily set by the mean circulation. The dominance of reoutcropping in 1 yr suggests that EDW outcropping contributes considerably to the persistence of surface temperature anomalies from one winter to the next, that is, the reemergence of winter sea surface temperature anomalies.We gratefully acknowledge the support from the NSF OCE Physical Oceanography program (NSF OCE-0961090 to Y-OK and J-JP; NSF OCE-0960776 to MSL and SFG; and NSF OCE-1242989 to Y-OK).2015-10-0

An integrated database-pipeline system for studying single nucleotide polymorphisms and diseases

<p>Abstract</p> <p>Background</p> <p>Studies on the relationship between disease and genetic variations such as single nucleotide polymorphisms (SNPs) are important. Genetic variations can cause disease by influencing important biological regulation processes. Despite the needs for analyzing SNP and disease correlation, most existing databases provide information only on functional variants at specific locations on the genome, or deal with only a few genes associated with disease. There is no combined resource to widely support gene-, SNP-, and disease-related information, and to capture relationships among such data. Therefore, we developed an integrated database-pipeline system for studying SNPs and diseases.</p> <p>Results</p> <p>To implement the pipeline system for the integrated database, we first unified complicated and redundant disease terms and gene names using the Unified Medical Language System (UMLS) for classification and noun modification, and the HUGO Gene Nomenclature Committee (HGNC) and NCBI gene databases. Next, we collected and integrated representative databases for three categories of information. For genes and proteins, we examined the NCBI mRNA, UniProt, UCSC Table Track and MitoDat databases. For genetic variants we used the dbSNP, JSNP, ALFRED, and HGVbase databases. For disease, we employed OMIM, GAD, and HGMD databases. The database-pipeline system provides a disease thesaurus, including genes and SNPs associated with disease. The search results for these categories are available on the web page <url>http://diseasome.kobic.re.kr/</url>, and a genome browser is also available to highlight findings, as well as to permit the convenient review of potentially deleterious SNPs among genes strongly associated with specific diseases and clinical phenotypes.</p> <p>Conclusion</p> <p>Our system is designed to capture the relationships between SNPs associated with disease and disease-causing genes. The integrated database-pipeline provides a list of candidate genes and SNP markers for evaluation in both epidemiological and molecular biological approaches to diseases-gene association studies. Furthermore, researchers then can decide semi-automatically the data set for association studies while considering the relationships between genetic variation and diseases. The database can also be economical for disease-association studies, as well as to facilitate an understanding of the processes which cause disease. Currently, the database contains 14,674 SNP records and 109,715 gene records associated with human diseases and it is updated at regular intervals.</p