28 research outputs found

    Length distribution and abundance of all miRNAs in horse muscle, colon, and liver tissues.

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    <p>Approximately 83% of all sequences in horse tissues are concentrated in the 20–24 nt range. The most frequent length is 23 nt in all tissues.</p

    Chromosomal locations of polycistronic miRNAs in horse.

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    <p>Individual black horizontal lines represent polycistronic miRNA transcripts, the stars refer to multiple miRNA genes in this region. The relative locations of individual miRNAs that are considered as a polycistron are within 3</p

    Venn diagram representing the distribution of known and novel miRNAs in horse muscle, colon, and liver tissues.

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    <p>Counts in the Venn diagram are the number of miRNAs identified in each tissue. A total 292 known (A) and 329 novel miRNAs (<b>B</b>) are identified in horse tissues including muscle, colon, and liver.</p

    Length distribution of novel miRNAs in horse tissues.

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    <p>miRNA sequences of all lengths are distributed in the 20–24 nt range. The most frequent length is 22 nt (34.65%) in horse miRNAs.</p

    Chromosomal locations of 292 known miRNA genes in horse.

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    <p>Black vertical lines represent the miRNA gene, the depth of color represents the number of miRNA genes in this region. The relative locations of individual miRNAs across the 32 horse chromosomes are shown with the exception of chromosomes 29 and 31.</p

    Son exome files

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    <p>The Fastq files represent the raw exome data for the son. The BAM files are derived from the fastq files by aligning the reads using a Burrows-Wheeler Aligner (BWA). The BAM file (.bam) is the binary version of a tab-delimited text file that contains sequence alignment data. The BAM file index (.bai) provides fast random access to the BAM file. The compressed VCF file (.vcf.gz) describes variant calls of the data in text format.</p

    23andMe SNPs for which SNPedia annotations are available

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    <p>Each file contains all SNPs in the individual matching an annotated SNP in SNPedia. SNPedia annotations contain a magnitude value (subjective measure of the importance of the potential phenotypical effect) and a phenotype description of the condition of particular genotype affects.</p

    SNPs from the Son’s exome data

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    <p>Summary of the most likely informative SNPs from the Son’s exome data as judged by their observed frequency in HapMap.</p
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