Additional file 1 of DotAligner: identification and clustering of RNA structure motifs

Supplementary methods describing the DotAligner implementation in detail, RNA structure clustering and eCLIP data processing methodologies. (PDF 602 kb

Additional file 2 of DotAligner: identification and clustering of RNA structure motifs

Supplementary tables and figures with descriptions. (PDF 3890 kb

Die klauselmäßige Einwilligung bei Bildnisrechten

Alpha diversity for all cancer types was compared pre- and post-filtering. The total number of OTUs before and after filtering for potential contaminant bacterial read pairs is plotted for each cancer type. Subsampling was done to accurately compare the large datasets, like AML and STAD to the smallest dataset, GBM. No major differences in alpha diversity were observed after filtering. (PDF 118 kb

Tula

Robert Cobean, Elizabeth Jiménez y Alba Guadalupe Mastache, Tula, México, Fondo de Cultura Económica/El Colegio de México, 2012, 230 pp. 

Activity-dependent transcriptional dynamics in mouse primary cortical and human iPS-derived neurons

<p>Poster presented at Lorne Genome 2012. Subsequently formed part of manuscript:</p> <p> </p> <p>Barry G, Briggs JA, Vanichkina DP, Poth EM, Beveridge NJ, Ratnu VS, Nayler SP, Nones K, Hu J, Bredy TW, Nakagawa S, Rigo F, Taft RJ, Cairns MJ, Blackshaw S, Wolvetang EJ, Mattick JS (2013). The long non-coding RNA Gomafu is acutely regulated in response to neuronal activation and involved in schizophrenia-associated alternative splicing. Molecular psychiatry doi: 10.1038/mp.2013.45</p