Phylogenetic reconstruction based on nucleotide sequence of LTR and coding genes from full-length FIV nucleotide sequences excluding

(A-E) Shown are the maximum likelihood trees (ML) which are identical to tree topologies using maximum parisimony (MP) and minimum evolution (ME) for each gene region. See methods and Additional file for specific parameters as implemented in PAUP ver 4.10b. (E) phylogeny does not include FIVsubtype A due to lack of sufficient homology for proper gene identification. (F) Phylogenetic tree of concatenated combined data of coding genes , , and . All nodes supported by 100% bootstrap proportions in ME, MP and ML analyses except for relative positions of FIVsubtypes which were supported by bootstraps >50% but less than 100% within the FIVclade.<p><b>Copyright information:</b></p><p>Taken from "Genomic organization, sequence divergence, and recombination of feline immunodeficiency virus from lions in the wild"</p><p>http://www.biomedcentral.com/1471-2164/9/66</p><p>BMC Genomics 2008;9():66-66.</p><p>Published online 5 Feb 2008</p><p>PMCID:PMC2270836.</p><p></p

Phylogenetic reconstruction based on nucleotide sequence of fulllength proviral FIV including and separate analysis of

A. Phylogenetic tree of concatenated combined data of coding genes , , and . B. Phylogenetic tree of sequences only. Shown is the maximum likelihood tree (ML) identical to tree topology using maximum parisimony (MP) and minimum evolution (ME) for each gene region. See methods and Additional file for specific parameters as implemented in PAUP ver 4.10b. All nodes supported by 100% bootstrap proportions in ME, MP and ML analyses except for relative positions of FIVsubtypes which were supported by bootstraps >50% but less than 100% within the FIVclade.<p><b>Copyright information:</b></p><p>Taken from "Genomic organization, sequence divergence, and recombination of feline immunodeficiency virus from lions in the wild"</p><p>http://www.biomedcentral.com/1471-2164/9/66</p><p>BMC Genomics 2008;9():66-66.</p><p>Published online 5 Feb 2008</p><p>PMCID:PMC2270836.</p><p></p