Determining threshold values for root-soil water weighted plant water deficit index based smart irrigation

Trabajo desarrollado bajo la financiación del proyecto “Soil Hydrology research platform underpinning innovation to manage water scarcity in European and Chinese cropping Systems” (773903), coordinado por José Alfonso Gómez Calero, investigador del Instituto de Agricultura Sostenible (IAS).Plant water deficit index (PWDI) represents the extent of water stress by relating soil moisture to the ability of a plant to take up water including consideration of the relative distribution of soil water to roots. However, for a smart irrigation decision support system, we are challenged in determining reliable thresholds of PWDI to initiate irrigation events to achieve predetermined yield and/or water use efficiency (WUE) targets. Taking drip irrigated maize and sprinkler irrigated alfalfa as examples, field experiments were conducted to investigate the choice and effects of PWDI thresholds. The results indicated that, with increasing PWDI thresholds, irrigation times and quantity of water, as well as crop transpiration, growth, and yield, were all significantly limited while WUE was enhanced except under extremely stressed conditions. To disconnect the unpredictable effects of other factors, yield and WUE were normalized to their corresponding potential values. Within the experimentally determined range of PWDI, relative yield and WUE were described with linear functions for maize, and linear and quadratic functions for alfalfa, allowing identification of the most efficient threshold value according to the objective parameter of choice. The method described can be adopted in smart irrigation decision support systems with consideration of spatial variability and after further verification and improvement under more complicated situations with various crop types and varieties, environmental conditions, cultivation modes, and wider or dynamic PWDI thresholds allowing regulated deficit irrigation.This research was supported partly by National Key Research and Development Program of China (2017YFE0118100, 2016YFD0200303), National Natural Science Foundation of China (U1706211, 51790532), Special Fund for Scientific Research in the Public Interest (201411009), and the European Union’s Horizon 2020 research and innovation programme under Project SHui, grant agreement No 773903.Peer reviewe

Fungal diversity notes 929–1035: taxonomic and phylogenetic contributions on genera and species of fungi

This article is the ninth in the series of Fungal Diversity Notes, where 107 taxa distributed in three phyla, nine classes, 31 orders and 57 families are described and illustrated. Taxa described in the present study include 12 new genera, 74 new species, three new combinations, two reference specimens, a re-circumscription of the epitype, and 15 records of sexualasexual morph connections, new hosts and new geographical distributions. Twelve new genera comprise Brunneofusispora, Brunneomurispora, Liua, Lonicericola, Neoeutypella, Paratrimmatostroma, Parazalerion, Proliferophorum, Pseudoastrosphaeriellopsis, Septomelanconiella, Velebitea and Vicosamyces. Seventy-four new species are Agaricus memnonius, A. langensis, Aleurodiscus patagonicus, Amanita flavoalba, A. subtropicana, Amphisphaeria mangrovei, Baorangia major, Bartalinia kunmingensis, Brunneofusispora sinensis, Brunneomurispora lonicerae, Capronia camelliaeyunnanensis, Clavulina thindii, Coniochaeta simbalensis, Conlarium thailandense, Coprinus trigonosporus, Liua muriformis, Cyphellophora filicis, Cytospora ulmicola, Dacrymyces invisibilis, Dictyocheirospora metroxylonis, Distoseptispora thysanolaenae, Emericellopsis koreana, Galiicola baoshanensis, Hygrocybe lucida, Hypoxylon teeravasati, Hyweljonesia indica, Keissleriella caraganae, Lactarius olivaceopallidus, Lactifluus midnapurensis, Lembosia brigadeirensis, Leptosphaeria urticae, Lonicericola hyaloseptispora, Lophiotrema mucilaginosis, Marasmiellus bicoloripes, Marasmius indojasminodorus, Micropeltis phetchaburiensis, Mucor orantomantidis, Murilentithecium lonicerae, Neobambusicola brunnea, Neoeutypella baoshanensis, Neoroussoella heveae, Neosetophoma lonicerae, Ophiobolus malleolus, Parabambusicola thysanolaenae, Paratrimmatostroma kunmingensis, Parazalerion indica, Penicillium dokdoense, Peroneutypa mangrovei, Phaeosphaeria cycadis, Phanerochaete australosanguinea, Plectosphaerella kunmingensis, Plenodomus artemisiae, P. lijiangensis, Proliferophorum thailandicum, Pseudoastrosphaeriellopsis kaveriana, Pseudohelicomyces menglunicus, Pseudoplagiostoma mangiferae, Robillarda mangiferae, Roussoella elaeicola, Russula choptae, R. uttarakhandia, Septomelanconiella thailandica, Spencermartinsia acericola, Sphaerellopsis isthmospora, Thozetella lithocarpi, Trechispora echinospora, Tremellochaete atlantica, Trichoderma koreanum, T. pinicola, T. rugulosum, Velebitea chrysotexta, Vicosamyces venturisporus, Wojnowiciella kunmingensis and Zopfiella indica. Three new combinations are Baorangia rufomaculata, Lanmaoa pallidorosea and Wojnowiciella rosicola. The reference specimens of Canalisporium kenyense and Tamsiniella labiosa are designated. The epitype of Sarcopeziza sicula is re-circumscribed based on cyto- and histochemical analyses. The sexual-asexual morph connection of Plenodomus sinensis is reported from ferns and Cirsium for the first time. In addition, the new host records and country records are Amanita altipes, A. melleialba, Amarenomyces dactylidis, Chaetosphaeria panamensis, Coniella vitis, Coprinopsis kubickae, Dothiorella sarmentorum, Leptobacillium leptobactrum var. calidus, Muyocopron lithocarpi, Neoroussoella solani, Periconia cortaderiae, Phragmocamarosporium hederae, Sphaerellopsis paraphysata and Sphaeropsis eucalypticola

Radiological and Clinical Features and Outcomes of Patients with Primary Pulmonary Salivary Gland-Type Tumors

Aim. To analyze the radiological, clinical, and prognostic features of primary pulmonary salivary gland-type tumors (SGTs) and improve their diagnosis. Materials and Methods. We retrospectively collected clinical and pathological data for 32 SGT cases confirmed by pathology and analyzed their radiological features, clinical presentations, and treatment outcomes. Results. Mucoepidermoid carcinoma (MEC) was more likely to occur in younger patients than was adenoid cystic carcinoma (ACC) (35 ± 15 years vs 48 ± 16 years, p=0.038). MEC was equally distributed between both sexes, whereas ACC was more frequent in females (66.7%). The main presenting symptom of SGT was cough (56.3%), followed by dyspnea (40.6%), associated with the tumor location. ACC more frequently involved the trachea or main bronchus (86.7% vs 25.0%, p=0.001) and more commonly presented as lobulated or circumferential thickening than MEC (93.3% vs 37.5%, p=0.002). MEC more frequently presented as obvious enhancement than ACC (68.8% vs 31.3%, p=0.001). CT findings suggestive of airway obstructive disease were more likely to be observed with MEC than ACC (73.3% vs 25.0%; p=0.021). The SUVmax in 8 of 10 patients with PET/CT data exceeded 2.2 but was less than 6.0. The overall survival (OS) at 3 and 5 years was 90.9% and 72.2% in all patients, respectively. Tumor-node-metastasis (TNM) stage, surgery, and patient age were associated with OS (p≤0.001, p=0.001, and p=0.001, respectively). Conclusion. SGTs commonly occur in patients at a young age and are associated with weak invasive features and a good prognosis. The predominant site and CT characteristics are significantly different between ACC and MEC

Introducing water stress hysteresis to the Feddes empirical macroscopic root water uptake model

Trabajo desarrollado bajo la financiación del proyecto “Soil Hydrology research platform underpinning innovation to manage water scarcity in European and Chinese cropping Systems” (773903), coordinado por José Alfonso Gómez Calero, investigador del Instituto de Agricultura Sostenible (IAS).During wetting-drying cycles, divergence is often found between the immediately improved soil water conditions after re-watering and the recovery of plant water status from stress, which ensues only gradually. Such an apparent hysteresis effect of water stress (HEWS) is usually neglected in simulating root-water-uptake (RWU) by empirical models. To consider HEWS in the empirical macroscopic RWU model of Feddes, a water stress recovery coefficient (δ) was introduced based on two lysimetric experiments under greenhouse and field conditions for winter wheat. The integrated effects of historical water stress events were investigated by assuming that the normalized influence weight of each past stress event declines with the increase of time interval before simulation as an exponential function of attenuation rate. Although δ could be described by an exponential function of an integrative index representing the general historical stress extent (R2 = 0.65, P < 0.001), with an attenuation rate smaller than 0.13, it is challenging to establish such a function practically. An attenuation rate close to zero means HEWS is mainly dominated by the water stress on the previous day, validated by a significant relationship between the relative transpiration or stomatal conductance on the day after irrigation and the water stress extent on the day before irrigation. Therefore, a simplification, substituting the integrative index in the exponential function with the stress extent on the previous day, was proposed for estimating δ. Compared to the traditional RWU model, the revised model considering HEWS was more successful in simulating relative transpiration and soil water dynamics. Root mean square error of relative transpiration was reduced by 65.9 % and of soil water by 30 % in the greenhouse experiment and by 7.4 % and 12.5 %, respectively, in the field experiment.This research was supported partly by National Natural Science Foundation of China (U1706211), National Key Research and Development Plan (2016YFD0200303) and National Natural Science Foundation of China (51790532, 51479199). This project has also received support from the European Union’s Horizon 2020 research and innovation programme under Project SHui, grant agreement No 773903.Peer reviewe

Research Status and Application Prospect of Bone Age Assessment by Ultrasonography

Bone age, the most commonly used and effective indicator for understanding children's growth and development, plays an important role in the diagnosis and efficacy evaluation of various growth and development disorders. Clinically, X-rays of the left hand and wrist are mostly taken for bone age assessment, but there is a certain radiation risk. Ultrasound can clearly display the epiphysis and secondary ossification center, and conveniently perform multi-site scanning and dynamic measurement without radiation. In recent years, great progress has been made in the research and clinical application of ultrasound in bone age assessment. This article, by reviewing the latest literature, discusses the value of musculoskeletal ultrasound and quantitative ultrasound in bone age assessment, raises the problems in the study of ultrasound assessment of bone age, and suggests direction for improvement

Estimating stomatal conductance and evapotranspiration of winter wheat using a soil-plant water relations-based stress index

Project Co-ordinators: Dr. Jose Alfonso Gómez Calero (Instituto de Agricultura Sostenible (IAS-CISC), Dr. Weifeng Xu (Fujian Agriculture and Forest University, FAFU). -- Trabajo desarrollado bajo la financiación del proyecto “Soil Hydrology research platform underpinning innovation to manage water scarcity in European and Chinese cropping Systems” (773903), coordinado por José Alfonso Gómez Calero, investigador del Instituto de Agricultura Sostenible (IAS).Stomatal conductance, closely related to water flow in the soil-plant-atmosphere continuum, is an important parameter in the Penman-Monteith (P-M) model for estimating evapotranspiration (ET). In this study, a novel soil water stress index ω, considering intrinsic soil-plant water relations, was introduced into the Jarvis empirical estimation model of stomatal conductance to improve the representation of the effect of soil water stress on stomatal conductance. The index ω accounted not only for current water availability by combing the effects of relative distribution of soil water to roots and nonlinear stomatal response, but also for the hysteresis effect of water stress by means of the inclusion of a recovery coefficient. Combined plant and soil-based measurements from a greenhouse experiment provided the basis for investigating the relationship between leaf stomatal conductance gs and root zone soil water stress represented by ω. The response of gs to root-weighted soil matric potential was found to be nonlinear. The relationship between gs and the extent of previous water stress (i.e. the water stress recovery coefficient curve) was generalized by a power function and was verified and confirmed using results obtained from the literature. The reliability of ω was tested by coupling it into the Jarvis model to estimate leaf (gs) and canopy (gc) stomatal conductance, and thereupon into the P-M model to estimate cumulative ET (CET) in the greenhouse experiment and two field experiments. The estimated gs, gc and CET agreed well with the measurements, with root mean squared error not more than 0.0006 m s−1, 0.0020 m s−1 and 8.2 mm, respectively, and determination coefficient (Nash-Sutcliffe efficiency coefficient) consistently greater than 65% (0.14). Therefore, ω should be feasible and reliable to delineate the response of stomatal physiological reaction to water stress, and hence helpful for accurate estimation of ET using Jarvis-based P-M models.This research was supported partly by National Natural Science Foundation of China (U1706211, 51790532), National Key Research and Development Program of China (2016YFD0200303, 2017YFE0118100), and the European Union's Horizon 2020 research and innovation programme under Project SHui, grant agreement No 773903.Peer reviewe

Crop yield estimation and irrigation scheduling optimization using a root-weighted soil water availability based water production function

Project Co-ordinators: Dr. Jose Alfonso Gómez Calero (Instituto de Agricultura Sostenible (IAS-CISC), Dr. Weifeng Xu (Fujian Agriculture and Forest University, FAFU). -- Trabajo desarrollado bajo la financiación del proyecto “Soil Hydrology research platform underpinning innovation to manage water scarcity in European and Chinese cropping Systems” (773903), coordinado por José Alfonso Gómez Calero, investigador del Instituto de Agricultura Sostenible (IAS).The crop-water production function (CWPF) is widely used to quantitatively describe relationships between crop water deficit and yield, and evaluate the effects of different irrigation strategies in agro-hydrological models. In order to reasonably and reliably estimate crop yield and optimize irrigation scheduling, a novel CWPF was proposed by combining the plant water deficit index (PWDI), estimated based on root-weighted soil water availability, with a daily water sensitivity index derived from a sigmoidal cumulative function. Parameterized using data from a two-year winter wheat field lysimetric experiment conducted in the North China Plain and from a previously published two-year spring maize field drip irrigation experiment in Inner Mongolia, China, the CWPFs provided reasonable estimation of different crop yields with different water stress response characteristics under different field environments. Through coupling the genetic algorithm with the integrated simulations of soil water dynamics, PWDI and CWPF in the soil-wheat system, an optimization procedure was developed to determine PWDI threshold combinations to timely trigger irrigation according to pre-designed crop water deficit status. Crop yield and water use efficiency (WUE) of winter wheat were estimated and compared under different optimized constant and variable PWDI threshold combinations. In addition, the effects of climate change on the optimized variable PWDI threshold combinations were investigated using 38 years of historic meteorological data. The results showed that regulated deficit irrigation (RDI) with a variable threshold combination, in which the sensitivity characteristics to water deficit were considered for the crop at different growth stages, was superior to a constant threshold in enhancing crop yield and WUE. Irrespective of the number of irrigation events (1, 2, 3 or 4) during the growing season, the coefficients of variation (CV) of optimized PWDI thresholds for different combinations of irrigation sequence and events were not very large under the same kind of hydrological year (wet, normal or dry), with CV < 0.39 and a median of 0.21. When the mean (MN) of the optimized PWDI threshold combinations for different irrigation sequence and events was used to schedule RDI of winter wheat in terms of various hydrological years, up to 91% of the estimated relative yield was found to be higher than 90% of the corresponding maximum values. Therefore, the MN can be valuable in formulating rational irrigation management strategies of winter wheat to achieve relatively high yields with limited water under changing climatic conditions.This research was supported partly by National Natural Science Foundation of China (U1706211, 51790532), National Key Research and Development Program of China (2017YFE0118100), and the European Union's Horizon 2020 research and innovation programme under Project SHui, grant agreement No 773903.Peer reviewe

Remote Sensing Data Fusion to Evaluate Patterns of Regional Evapotranspiration: A Case Study for Dynamics of Film-Mulched Drip-Irrigated Cotton in China&rsquo;s Manas River Basin over 20 Years

The accurate quantification of evapotranspiration (ET) is critical to the sustainable management of irrigated agriculture. In this study, we proposed a remote sensing data fusion method for predicting ET, coupling a surface energy balance system model with an enhanced spatial and temporal adaptive reflectance fusion model utilizing remote sensing inversion with satellite data from Landsat and MODIS. The method was tested for a case study with cotton fields under film-mulched drip irrigation (FMDI) in the Manas River Basin. Areas under FMDI were identified, and ET patterns were evaluated for a 21-year period spanning from 2000 to 2020. A field experiment, a regional survey, and data retrieved from the literature provided results demonstrating that the method allowed reliable estimation of ET distribution with simultaneously, relatively high spatial and temporal resolutions at both field and regional scales. ET was found to decline from upstream to downstream in the basin, with the difference gradually diminishing over time. Supported by the promotion of FMDI technology, the area under cotton production in the basin increased by an average of 4.9% annually. Limited irrigation quotas to farmers and, therefore, water application per area led to a decreasing ratio of relative water supply for potential ET and, thus, to a reduction in average actual ET of 7.5 mm year&minus;1. The average ET in the basin declined to about 415.7 mm in 2020, 287.2 mm lower than its water demand. The dynamics of fused ET provide a reliable scientific basis for agricultural water resources planning and management and for the sustainable utilization of water and soil resources in the basin. The method, with simultaneously high temporal and spatial resolutions, should have both local and global practical potential

Numerically scheduling plant water deficit index-based smart irrigation to optimize crop yield and water use efficiency

Project Co-ordinators: Dr. Jose Alfonso Gómez Calero (Instituto de Agricultura Sostenible (IAS-CISC), Dr. Weifeng Xu (Fujian Agriculture and Forest University, FAFU). -- Trabajo desarrollado bajo la financiación del proyecto “Soil Hydrology research platform underpinning innovation to manage water scarcity in European and Chinese cropping Systems” (773903), coordinado por José Alfonso Gómez Calero, investigador del Instituto de Agricultura Sostenible (IAS).Knowledge-driven "smart" irrigation proposes to achieve explicitly targeted crop yield and/or irrigation water use efficiency (WUE). A coupled crop growth and soil water transport model was established and applied to schedule irrigation for drip-irrigated and film-mulched maize through numerical simulation. By designing various scenarios with either a constant or variable threshold of plant water deficit index (PWDI) to initiate irrigation, the quantitative relationship between PWDI threshold and the corresponding yield and WUE was investigated with acceptable errors between the measured and simulated values (R2 > 0.85). The model allowed determination of PWDI thresholds designed to reach specific combinations of yield and WUE to consider actual conditions such as availability and cost of water resources. Regulated deficit irrigation with a variable threshold, considering variability of physiological response to water stress, was superior to a constant PWDI threshold in improving WUE. A constant PWDI threshold of 0.54 and 45 threshold combinations among various growth stages were suggested to obtain same relative values of yield and WUE. Numerical simulation has the potential to provide reliable dynamic information regarding soil water and crop growth, necessary for smart irrigation scheduling, due to its ability in integrating the effects of environmental conditions and economic considerations and, as such, should be further studied to enhance simulation accuracy and subsequently to optimize irrigation scheduling under complex situations.This research was supported partly by National Key Research and Development Program of China (2016YFD0200303, 2017YFE0118100), National Natural Science Foundation of China (U1706211, 51790532), Special Fund for Scientific Research in the Public Interest (201411009), and the European Union’s Horizon 2020 Research and Innovation Programme under Project SHui, grant agreement No 773903.Peer reviewe

Parameterization of the water stress reduction function based on soil–plant water relations

Project Co-ordinators: Dr. Jose Alfonso Gómez Calero (Instituto de Agricultura Sostenible (IAS-CISC), Dr. Weifeng Xu (Fujian Agriculture and Forest University, FAFU). -- Trabajo desarrollado bajo la financiación del proyecto “Soil Hydrology research platform underpinning innovation to manage water scarcity in European and Chinese cropping Systems” (773903), coordinado por José Alfonso Gómez Calero, investigador del Instituto de Agricultura Sostenible (IAS).Rational parameterization of the soil water stress reduction function in root water uptake model is crucial for accurate description of root water uptake and simulation of soil water dynamics in a soil–plant system. In this study, we propose three improvements to a popular transpiration-based approach to parameterize the water stress reduction function in a widely used macroscopic root water uptake model. The improvements are based on the interdependent relationships between soil and plant water status and consideration of effects of (1) relative distribution of soil water to roots on transpiration; (2) differences in growth levels of plants exposed to different levels of water stresses on potential transpiration; and (3) hysteresis of water stress on parameter optimization through identifying and discarding the data involved in the recovery periods when the discrepancy between soil and plant water availability is significant. Lysimetric experiments with winter wheat planted alternatively in greenhouse soil columns and in a field were conducted to test the proposed improvements. Through minimizing the residuals between the measured and estimated actual transpiration, the optimized parameterization was used to set up the root water uptake model. Thereupon, actual transpiration and relative transpiration were estimated and soil water content distributions were simulated. The estimated actual (RMSE ≤ 0.09 cm day−1) and relative (RMSE = 0.06) transpiration agreed well with the measurements. The simulated soil water content distributions also matched the measured values well for both experiments (RMSE ≤ 0.023 cm3 cm−3). Omitting any of the three proposed improvements reduced the estimation accuracy of relative transpiration, as the individual contribution ratio for each improvement was between 21.2 and 51.2%. The improvements should be reasonable in providing rational parameter estimation for the water stress reduction function, from which root water uptake models can be established to accurately evaluate plant transpiration and simulate soil water flow in a soil–plant system. The parameterization strategy for the water stress reduction function of root water uptake not only benefits accurate evaluation of plant transpiration under drought conditions but also contributes to further study and description regarding the apparent hysteresis of root water uptake after re-watering.This research was supported partly by the National Natural Science Foundation of China (U1706211), National Key Research and Development Plan (2016YFD0200303) and National Natural Science Foundation of China (51790532). This project has also received support from the European Union’s Horizon 2020 research and innovation programme under Project SHui, grant agreement No 773903.Peer reviewe