Genomic regions of difference present in <i>Gallibacterium anatis</i> UMN179 but absent from F149^T. Name designations refer to that used in Fig. 1.

<p>Genomic regions of difference present in <i>Gallibacterium anatis</i> UMN179 but absent from F149^T. Name designations refer to that used in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0054844#pone-0054844-g001" target="_blank">Fig. 1</a>.</p

Prediction subcellular localization of <i>Gallibacterium anatis</i> UMN179 proteins using PSORTb 3.0.

<p>Prediction subcellular localization of <i>Gallibacterium anatis</i> UMN179 proteins using PSORTb 3.0.</p

Primer sequences and characteristics of regions used for multilocus sequence analysis.

<p>Primer sequences and characteristics of regions used for multilocus sequence analysis.</p

Inferred phylogeny of eight completed bacterial genomes.

<p>Panel A: Inferred phylogeny of eight completed bacterial genomes using their 16S rRNA sequences. Data was analyzed using the Maximum Likelihood method based on the JTT matrix-based model conducted in MEGA5. There were a total of 1,515 positions in the final dataset and 100 bootstrap replicates were included. Panel B: Inferred phylogeny of eight completed bacterial genomes using whole genome alignment. Alignments were conducted in MAUVE <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0054844#pone.0054844-Darling1" target="_blank">[21]</a> and SNPs within conserved regions were extracted. Data was analyzed using the Maximum Likelihood method based on the JTT matrix-based model conducted in MEGA5. There were a total of 98,659 positions in the final dataset and 100 bootstrap replicates were included.</p

Inferred phylogeny of the fimbrial usher proteins of UMN179.

<p>Data was analyzed using the Maximum Likelihood method based on the JTT matrix-based model conducted in MEGA5. There were a total of 666 positions in the final dataset and 500 bootstrap replicates were included.</p

Inferred phylogeny of <i>Gallibacterium anatis</i> using concatenated sequences for eight housekeeping genes.

<p>Data was analyzed using the Maximum Likelihood method based on the Hasegawa-Kishino-Yano model in MEGA5. A total of 4,172 positions were used in the final dataset and 100 bootstrap replicates were included.</p

Inferred phylogeny of the TopB proteins of integrative conjugative elements (ICEs) of UMN179, F149, and 12656-12 and similar ICEs in the NCBI database.

<p>Data was analyzed using the Maximum Likelihood method based on the JTT matrix-based model conducted in MEGA5. There were a total of 596 positions in the final dataset and 500 bootstrap replicates were included.</p