Linear and nonlinear stratified spindown over sloping topography

Submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy at the Massachusetts Institute of Technology and the Woods Hole Oceanographic Institution June 2010In a stratified rotating fluid, frictionally driven circulations couple with the buoyancy field over sloping topography. Analytical and numerical methods are used to quantify the impact of this coupling on the vertical circulation, spindown of geostrophic flows, and the formation of a shelfbreak jet. Over a stratified slope, linear spindown of a geostrophic along-isobath flow induces cross-isobath Ekman flows. Ekman advection of buoyancy weakens the vertical circulation and slows spindown. Upslope (downslope) Ekman flows tend to inject (remove) potential vorticity into (from) the ocean. Momentum advection and nonlinear buoyancy advection are examined in setting asymmetries in the vertical circulation and the vertical relative vorticity field. During nonlinear homogeneous spindown over a flat bottom, momentum advection weakens Ekman pumping and strengthens Ekman suction, while cyclonic vorticity decays faster than anticyclonic vorticity. During nonlinear stratified spindown over a slope, nonlinear advection of buoyancy enhances the asymmetry in Ekman pumping and suction, whereas anticyclonic vorticity can decay faster than cyclonic vorticity outside of the boundary layers. During the adjustment of a spatially uniform geostrophic current over a shelfbreak, coupling between the Ekman flow and the buoyancy field generates Ekman pumping near the shelfbreak, which leads to the formation of a jet. Scalings are presented for the upwelling strength, the length scale over which it occurs, and the timescale for jet formation. The results are applied to the Middle Atlantic Bight shelfbreak.Funding for my research and education was provided by MIT EAPS, the WHOI Academic Programs O ce and the MIT Presidential Fellowship. Financial assistance from the Houghton Fund is also acknowledged

Nonlinear stratified spindown over a slope

Author Posting. © Cambridge University Press, 2013. This article is posted here by permission of Cambridge University Press for personal use, not for redistribution. The definitive version was published in Journal of Fluid Mechanics 726 (2013): 371-403, doi:10.1017/jfm.2013.231.Nonlinear stratified spindown of an along-isobath current over an insulated slope is shown to develop asymmetries in the vertical circulation and vertical relative vorticity field. During spindown, cyclonic vorticity is weakened to a greater extent than anticyclonic vorticity near the boundary because of buoyancy advection. As a consequence, Ekman pumping is weakened over Ekman suction. Momentum advection can weaken Ekman pumping and strengthen Ekman suction. Time-dependent feedback between the geostrophic flow and the frictional secondary circulation induces asymmetry in cyclonic and anticyclonic vorticity away from the boundary. Buoyancy advection over a slope can modify the secondary circulation such that anticyclonic vorticity decays faster than cyclonic vorticity outside the boundary layer. In contrast, momentum advection can cause cyclonic vorticity to spin down faster than anticyclonic vorticity. A scaling and analytical solutions are derived for when buoyancy advection over a slope can have a more significant impact than momentum advection on these asymmetries. In order to test this scaling and analytical solutions, numerical experiments are run in which both buoyancy and momentum advection are active. These solutions are contrasted with homogeneous or stratified spindown over a flat bottom, in which momentum advection controls the asymmetries. These results are applied to ocean currents over continental shelves and slopes.2014-06-0

Asymmetries in vertical vorticity and vertical velocity arising during nonlinear homogeneous spindown

Author Posting. © The Author(s), 2012. This is the author's version of the work. It is posted here by permission of American Institute of Physics for personal use, not for redistribution. The definitive version was published in Physics of Fluids 24 (2012): 076601, doi:10.1063/1.4731280.During the spindown of a uni-directional, geostrophic current in a homogeneous fluid, asymmetry arises in the vertical velocity and vertical relative vorticity fields. A closed-form, time-dependent solution valid to order Rossby number is derived to explore these asymmetries. Momentum advection in the interior and the Ekman layer leads to competing tendencies in the vertical vorticity’s evolution. In the interior, momentum advection hastens spindown in cyclonic regions. In the Ekman layer, momentum advection weakens Ekman pumping over Ekman suction and thus tends to slow the spindown of cyclonic vorticity. It is shown that the former effect dominates, and hence cyclonic vorticity decays faster than anticyclonic vorticity

Editorial: advances in understanding marine heatwaves and their impacts

© The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Benthuysen, J. A., Oliver, E. C. J., Chen, K., & Wernberg, T. Editorial: advances in understanding marine heatwaves and their impacts. Frontiers in Marine Science, 7, (2020): 147, doi:10.3389/fmars.2020.00147.Editorial on the Research Topic Advances in Understanding Marine Heatwaves and Their Impacts In recent years, prolonged, extremely warm water events, known as marine heatwaves, have featured prominently around the globe with their disruptive consequences for marine ecosystems. Over the past decade, marine heatwaves have occurred from the open ocean to marginal seas and coastal regions, including the unprecedented 2011 Western Australia marine heatwave (Ningaloo Niño) in the eastern Indian Ocean (e.g., Pearce et al., 2011), the 2012 northwest Atlantic marine heatwave (Chen et al., 2014), the 2012 and 2015 Mediterranean Sea marine heatwaves (Darmaraki et al., 2019), the 2013/14 western South Atlantic (Rodrigues et al., 2019) and 2017 southwestern Atlantic marine heatwave (Manta et al., 2018), the persistent 2014–2016 “Blob” in the North Pacific (Bond et al., 2015; Di Lorenzo and Mantua, 2016), the 2015/16 marine heatwave spanning the southeastern tropical Indian Ocean to the Coral Sea (Benthuysen et al., 2018), and the Tasman Sea marine heatwaves in 2015/16 (Oliver et al., 2017) and 2017/18 (Salinger et al., 2019). These events have set new records for marine heatwave intensity, the temperature anomaly exceeding a climatology, and duration, the sustained period of extreme temperatures. We have witnessed the profound consequences of these thermal disturbances from acute changes to marine life to enduring impacts on species, populations, and communities (Smale et al., 2019). These marine heatwaves have spurred a diversity of research spanning the methodology of identifying and quantifying the events (e.g., Hobday et al., 2016) and their historical trends (Oliver et al., 2018), understanding their physical mechanisms and relationships with climate modes (e.g., Holbrook et al., 2019), climate projections (Frölicher et al., 2018), and understanding the biological impacts for organisms and ecosystem function and services (e.g., Smale et al., 2019). By using sea surface temperature percentiles, temperature anomalies can be quantified based on their local variability and account for the broad range of temperature regimes in different marine environments. For temperatures exceeding a 90th-percentile threshold beyond a period of 5-days, marine heatwaves can be classified into categories based on their intensity (Hobday et al., 2018). While these recent advances have provided the framework for understanding key aspects of marine heatwaves, a challenge lies ahead for effective integration of physical and biological knowledge for prediction of marine heatwaves and their ecological impacts. This Research Topic is motivated by the need to understand the mechanisms for how marine heatwaves develop and the biological responses to thermal stress events. This Research Topic is a collection of 18 research articles and three review articles aimed at advancing our knowledge of marine heatwaves within four themes. These themes include methods for detecting marine heatwaves, understanding their physical mechanisms, seasonal forecasting and climate projections, and ecological impacts.We thank the contributing authors, reviewers, and the editorial staff at Frontiers in Marine Science for their support in producing this issue. We thank the Marine Heatwaves Working Group (http://www.marineheatwaves.org/) for inspiration and discussions. This special issue stemmed from the session on Advances in Understanding Marine Heat Waves and Their Impacts at the 2018 Ocean Sciences meeting (Portland, USA)

Rapid generation of upwelling at a shelf break caused by buoyancy shutdown

Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 45 (2015): 294–312, doi:10.1175/JPO-D-14-0104.1.Model analyses of an alongshelf flow over a continental shelf and slope reveal upwelling near the shelf break. A stratified, initially uniform, alongshelf flow undergoes a rapid adjustment with notable differences onshore and offshore of the shelf break. Over the shelf, a bottom boundary layer and an offshore bottom Ekman transport develop within an inertial period. Over the slope, the bottom offshore transport is reduced from the shelf’s bottom transport by two processes. First, advection of buoyancy downslope induces vertical mixing, destratifying, and thickening the bottom boundary layer. The downward-tilting isopycnals reduce the geostrophic speed near the bottom. The reduced bottom stress weakens the offshore Ekman transport, a process known as buoyancy shutdown of the Ekman transport. Second, the thickening bottom boundary layer and weakening near-bottom speeds are balanced by an upslope ageostrophic transport. The convergence in the bottom transport induces adiabatic upwelling offshore of the shelf break. For a time period after the initial adjustment, scalings are identified for the upwelling speed and the length scale over which it occurs. Numerical experiments are used to test the scalings for a range of initial speeds and stratifications. Upwelling occurs within an inertial period, reaching values of up to 10 m day−1 within 2 to 7 km offshore of the shelf break. Upwelling drives an interior secondary circulation that accelerates the alongshelf flow over the slope, forming a shelfbreak jet. The model results are compared with upwelling estimates from other models and observations near the Middle Atlantic Bight shelf break.J. Benthuysen acknowledges support from the ARC Centre of Excellence for Climate System Science (CE110001028) and the MIT/WHOI Joint Program, where this work was initiated.2015-07-0

The El Niño Southern Oscillation drives multidirectional inter-reef larval connectivity in the Great Barrier Reef

The El Niño Southern Oscillation (ENSO) is the strongest source of interannual global climate variability, and extreme ENSO events are projected to increase in frequency under climate change. Interannual variability in the Coral Sea circulation has been associated with ENSO, although uncertainty remains regarding ENSO's influence on hydrodynamics and larval dispersal in the adjacent Great Barrier Reef (GBR). We investigated larval connectivity during ENSO events from 2010 to 2017 throughout the GBR, based on biophysical modelling of a widespread predatory reef fish, Lutjanus carponotatus. Our results indicate a well-connected system over the study period with high interannual variability in inter-reef connectivity associated with ENSO. Larval connectivity patterns were highly correlated to variations in the Southern Oscillation Index (SOI). During El Niño conditions and periods of weak SOI, larval dispersal patterns were predominantly poleward in the central and southern regions, reversing to a predominant equatorward flow during very strong SOI and extreme La Niña conditions. These ENSO-linked connectivity patterns were associated with positive connectivity anomalies among reefs. Our findings identify ENSO as an important source of variation in larval dispersal and connectivity patterns in the GBR, which can influence the stability of population dynamics and patterns of biodiversity in the region

Seasonal organic matter dynamics in the Great Barrier Reef lagoon: contribution of carbohydrates and proteins

Organic matter (OM) plays a fundamental role in sustaining the high productivity of coral reef ecosystems. Carbohydrates and proteins constitute two of the major chemical classes identified in the OM pool and are used as indicators of bioavailability due to their fast turn-over. We conducted three cruises across the southern shelf of the Great Barrier Reef (GBR) during the early dry, late dry and wet seasons in 2009–2010 to 1) assess the relative bioavailability of particulate (POM) and dissolved (DOM) organic matter, 2) track the temporal and spatial variability in the carbohydrate and protein contribution to the OM pool, and 3) assess factors influencing protein and carbohydrate fractions of the OM pool. Generally, higher concentrations of particulate carbohydrates were found during the wet season, while similar concentrations of particulate protein were found during the three seasons. Both the dissolved carbohydrates and proteins had highest levels during the early dry season and lowest during the wet season, suggesting seasonal variations in the chemical composition of the DOM pool. Spatially, carbohydrates showed higher concentrations at the inshore stations, while no clear spatial pattern was found for the protein concentrations. On average carbohydrates and proteins accounted for a similar fraction (13±5 and 12±6% respectively) of POM, while carbohydrates accounted for a smaller fraction of the DOM than the proteins (6±3 and 13±10%). This suggests that the POM bioavailability was similar between seasons, while the DOM bioavailability varied seasonally with highest levels during the early dry season. This demonstrates that carbohydrates and proteins in the GBR have temporal and spatial variations. Our statistical analysis showed that 1) both carbohydrates and proteins were related with the POM and DOM C:N:P stoichiometry, demonstrating that both bulk estimates (stoichiometry) and specific compounds (CHO and Prot) provide useful measures of OM bioavailability in the GBR and 2) the carbohydrates and proteins levels were controlled by the amount of nutrients and POM, which in this system is mainly of plankton origin. Overall this study shows that the POM and DOM pools contain highly bioavailable compounds and that carbohydrate and proteins could play an important role in sustaining the productivity of the GBR

Categorizing and naming marine heatwaves

Considerable attention has been directed at understanding the conse-quences and impacts of long-term anthropogenic climate change. Discrete, climati-cally extreme events such as cyclones, floods, and heatwaves can also significantly affect regional environments and species, including humans. Climate change is expected to intensify these events and thus exacerbate their effects. Climatic extremes also occur in the ocean, and recent decades have seen many high-impact marine heatwaves (MHWs)—anomalously warm water events that may last many months and extend over thousands of square kilometers. A range of biological, economic, and political impacts have been associated with the more intense MHWs, and measuring the sever-ity of these phenomena is becoming more important. Progress in understanding and public awareness will be facilitated by consistent description of these events. Here, we propose a detailed categorization scheme for MHWs that builds on a recently published classification, combining elements from schemes that describe atmospheric heatwaves and hurricanes. Category I, II, III, and IV MHWs are defined based on the degree to which temperatures exceed the local climatology and illustrated for 10 MHWs. While there is a long-term increase in the occurrence frequency of all MHW categories, the largest trend is a 24% increase in the area of the ocean where strong (Category II) MHWs occur. Use of this scheme can help explain why biological impacts associated with different MHWs can vary widely and provides a consistent way to compare events. We also propose a simple naming convention based on geography and year that would further enhance scientific and public awareness of these marine events

Topographic beta spiral and onshore intrusion of the Kuroshio Current

Author Posting. © American Geophysical Union, 2018. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Geophysical Research Letters 45 (2018): 287–296, doi:10.1002/2017GL076614.The Kuroshio intrusion plays a vitally important role in carrying nutrients to marginal seas. However, the key mechanism leading to the Kuroshio intrusion remains unclear. In this study we postulate a mechanism: when the Kuroshio runs onto steep topography northeast of Taiwan, the strong inertia gives rise to upwelling over topography, leading to a left-hand spiral in the stratified ocean. This is called the topographic beta spiral, which is a major player regulating the Kuroshio intrusion; this spiral can be inferred from hydrographic surveys. In the world oceans, the topographic beta spirals can be induced by upwelling generated by strong currents running onto steep topography. This is a vital mechanism regulating onshore intruding flow and the cross-shelf transport of energy and nutrients from the Kuroshio Current to the East China Sea. This topographic beta spiral reveals a long-term missing link between the oceanic general circulation theory and shelf dynamic theory.Strategic Priority Research Program of the Chinese Academy of Sciences Grant Numbers: XDA11020104, XDA110203052; National Natural Science Foundation of China (NSFC) Grant Numbers: 41576023, 41376030, 41476019; Foundation for Innovative Research Groups of NSFC Grant Number: 41421005; NSFC-Shandong Joint Fund for Marine Science Research Centers Grant Number: U1406401; Aoshan Sci-Tec Innovative Project of Qingdao National Laboratory for Marine Science and Technology Grant Number: 2016ASKJ02; National Key Research and Development Program of China Grant Numbers: 2017YFC1404000, 2016YFC1401601; National Key research and development Plan Sino-Australian Center for Healthy Coasts Grant Number: 2016YFE01015002018-07-1

Projected marine heatwaves in the 21st century and the potential for ecological impact

Marine heatwaves (MHWs) are extreme climatic events in oceanic systems that can have devastating impacts on ecosystems, causing abrupt ecological changes and socioeconomic consequences. Several prominent MHWs have attracted scientific and public interest, and recent assessments have documented global and regional increases in their frequency. However, for proactive marine management, it is critical to understand how patterns might change in the future. Here, we estimate future changes in MHWs to the end of the 21st century, as simulated by the CMIP5 global climate model projections. Significant increases in MHW intensity and count of annual MHW days are projected to accelerate, with many parts of the ocean reaching a near-permanent MHW state by the late 21st century. The two greenhouse gas (GHG) emission scenarios considered (Representative Concentration Pathway 4.5 and 8.5) strongly affect the projected intensity of MHW events, the proportion of the globe exposed to permanent MHW states, and the occurrence of the most extreme MHW events. Comparison with simulations of a natural world, without anthropogenic forcing, indicate that these trends have emerged from the expected range of natural variability within the first half of the 21st century. This discrepancy implies a degree of “anthropogenic emergence,” with a departure from the natural MHW conditions that have previously shaped marine ecosystems for centuries or even millennia. Based on these projections we expect impacts on marine ecosystems to be widespread, significant and persistent through the 21st century.This research was supported by the Australian Research Council grants CE170100023 and FT170100106, Natural Environment Research Council International Opportunity Fund NE/N00678X/1, National Sciences and Engineering Research Council of Canada Discovery Grant RGPIN-2018-05255, and Brian Mason (Impacts of an unprecedented marine heatwave). This project was partially supported through funding from the Earth Systems and Climate Change Hub of the Australian Government’s National Environmental Science Program.Peer ReviewedPostprint (published version