On a semiparametric survival model with flexible covariate effect.

A semiparametric hazard model with parametrized time but general covariate dependency is formulated and analyzed inside the framework of counting process theory. A profile likelihood principle is introduced for estimation of the parameters: the resulting estimator is n1/2-consistent, asymptotically normal and achieves the semiparametric efficiency bound. An estimation procedure for the nonparametric part is also given and its asymptotic properties are derived. We provide an application to mortality data.

Efficient qubit detection using alkali earth metal ions and a double STIRAP process

We present a scheme for robust and efficient projection measurement of a qubit consisting of the two magnetic sublevels in the electronic ground state of alkali earth metal ions. The scheme is based on two stimulated Raman adiabatic passages (STIRAP) involving four partially coherent laser fields. We show how the efficiency depends on experimentally relevant parameters: Rabi frequencies, pulse widths, laser linewidths, one- and two-photon detunings, residual laser power, laser polarization and ion motion.Comment: 14 pages, 15 figure

The effect of New Neonatal Porcine Diarrhoea Syndrome (NNPDS) on average daily gain and mortality in 4 Danish pig herds

BACKGROUND: The study evaluated the effect of New Neonatal Porcine Diarrhoea Syndrome (NNPDS) on average daily gain (ADG) and mortality and described the clinical manifestations in four herds suffering from the syndrome. NNPDS is a diarrhoeic syndrome affecting piglets within the first week of life, which is not caused by enterotoxigenic Escherichia coli (ETEC), Clostridium perfringens (C. perfringens) type A/C, Clostridium difficile (C. difficile), rotavirus A, coronavirus, Cystoisospora suis, Strongyloides ransomi, Giardia spp or Cryptosporidium spp. RESULTS: Piglets were estimated to have a negative ADG of 9 and 14 g when diarrhoeic for 1 day and >1 day respectively. However, if only diarrhoeic on the day of birth, no negative effect on ADG was seen. Piglets originating from severely affected litters were estimated to have a reduced ADG of 38 g. The study did not show an overall effect of diarrhoea on mortality, but herd of origin, sow parity, birth weight, and gender were significantly associated with mortality. In one of the herds, approximately 25% of the diarrhoeic piglets vs. 6% of the non-diarrhoeic piglets died, and 74% of necropsied piglets were diagnosed with enteritis. These findings indicate that the high mortality seen in this herd was due to diarrhoea. CONCLUSIONS: NNPDS negatively affected ADG in piglets, and even piglets that were diarrhoeic for one day only experienced a reduction in ADG. However, the study showed that diarrhoea restricted to the day of birth did not affect ADG and suggested this phenomenon to be unrelated to the syndrome. Since the diarrhoeal status of the litter had important effects on ADG, future research on NNPDS probably ought to focus on piglets from severely affected litters. The study showed important dissimilarities in the course of diarrhoea between the herds, and one herd was considerably more affected than the others. Within this herd, NNPDS seemed to be associated with a higher mortality, whereas in general the study did not show lethal effects of NNPDS

Metamodelling of wheel–rail normal contact in railway crossings with elasto-plastic material behaviour

A metamodel considering material plasticity is presented for computationally efficient prediction of wheel–rail normal contact in railway switches and crossings (S&C). The metamodel is inspired by the contact theory of Hertz, and for a given material, it computes the size of the contact patch and the maximum contact pressure as a function of the normal force and the local curvatures of the bodies in contact. The model is calibrated based on finite element (FE) simulations with an elasto-plastic material model and is demonstrated for rail steel grade R350HT. The error of simplifying the contact geometry is discussed and quantified. For a moderate difference in contact curvature between wheel and rail, the metamodel is able to accurately predict the size of the contact patch and the maximum contact pressure. The accuracy is worse when there is a small difference in contact curvature, where the influence of variation in curvature within the contact patch becomes more significant. However, it is shown that such conditions lead to contact stresses that contribute less to accumulated plastic deformation. The metamodel allows for a vast reduction of computational effort compared to the original FE model as it is given in analytical form

On the influence of crossing angle on long-term rail damage evolution in railway crossings

The rails in railway crossings are subjected to severe load environment leading to degradation of running surface due to wear and accumulated plastic deformation. To compare long-term degradation of three fixed crossings with different crossing angles, nominally designated 1:12, 1:15, and 1:18.5, a multidisciplinary simulation methodology is applied to predict damage of the crossing rail. For a given traffic scenario, including up to 65 MGT of facing move passenger traffic in through route, the results show that damage increases with increasing crossing angle. The ratio between the maximum damage for the crossings with the largest and smallest crossing angles is found to be about three in terms of wear and about two for plastic deformation. Initially high rate of plastic deformation reduces significantly after the first 2–5 MGT, and after 10–30 MGT it approaches a nearly constant value that is significantly lower than the wear rate

Mapping the polysaccharide degradation potential of Aspergillus niger

<p>Abstract</p> <p>Background</p> <p>The degradation of plant materials by enzymes is an industry of increasing importance. For sustainable production of second generation biofuels and other products of industrial biotechnology, efficient degradation of non-edible plant polysaccharides such as hemicellulose is required. For each type of hemicellulose, a complex mixture of enzymes is required for complete conversion to fermentable monosaccharides. In plant-biomass degrading fungi, these enzymes are regulated and released by complex regulatory structures. In this study, we present a methodology for evaluating the potential of a given fungus for polysaccharide degradation.</p> <p>Results</p> <p>Through the compilation of information from 203 articles, we have systematized knowledge on the structure and degradation of 16 major types of plant polysaccharides to form a graphical overview. As a case example, we have combined this with a list of 188 genes coding for carbohydrate-active enzymes from <it>Aspergillus niger</it>, thus forming an analysis framework, which can be queried. Combination of this information network with gene expression analysis on mono- and polysaccharide substrates has allowed elucidation of concerted gene expression from this organism. One such example is the identification of a full set of extracellular polysaccharide-acting genes for the degradation of oat spelt xylan.</p> <p>Conclusions</p> <p>The mapping of plant polysaccharide structures along with the corresponding enzymatic activities is a powerful framework for expression analysis of carbohydrate-active enzymes. Applying this network-based approach, we provide the first genome-scale characterization of all genes coding for carbohydrate-active enzymes identified in <it>A. niger</it>.</p