23 research outputs found
Parallel boxplots of the within-pair log2 difference for the 12 DE probes identified by <i>eLNNpaired</i> for GSE24742.
<p>Parallel boxplots of the within-pair log2 difference for the 12 DE probes identified by <i>eLNNpaired</i> for GSE24742.</p
Summary of agreement indices from simulation results for the scenario where <i>n</i> = 30 pairs per data set.
<p>Summary of agreement indices from simulation results for the scenario where <i>n</i> = 30 pairs per data set.</p
Cross table of the 3-cluster partitions obtained by <i>eLNNpaired</i>, <i>limma</i>, <i>gt</i>, <i>samr</i>, and <i>lmPerGene</i>.
<p>Cross table of the 3-cluster partitions obtained by <i>eLNNpaired</i>, <i>limma</i>, <i>gt</i>, <i>samr</i>, and <i>lmPerGene</i>.</p
The estimates of the <i>eLNNpaired</i> model parameters for the 3 GEO datasets.
<p>The estimates of the <i>eLNNpaired</i> model parameters for the 3 GEO datasets.</p
Boxplots of the error rates (FDR, FNDR, FNR, and FPR) for <i>eLNNpaired</i>, <i>limma</i>, <i>gt</i>, <i>samr</i>, and <i>lmPerGene</i> based on simulation G30.
<p>Top-left panel: FDR; Top-right panel: FNDR; Bottom-left panel: FPR; Bottom-right panel: FNR.</p
Summary of error rates from simulation results for the scenario where <i>n</i> = 30 pairs per data set.
<p>Summary of error rates from simulation results for the scenario where <i>n</i> = 30 pairs per data set.</p
Total elapsed times (seconds) for the 3 GEO data sets.
<p>Total elapsed times (seconds) for the 3 GEO data sets.</p
Boxplots of the agreement indices (Rand, HA, MA, FM, and Jaccard) for <i>eLNNpaired</i>, <i>limma</i>, <i>gt</i>, <i>samr</i>, and <i>lmPerGene</i> based on simulation G30.
<p>Top-left panel: Rand; Top-middle panel: HA; Top-right panel: MA; Bottom-left panel: FM; Bottom-right panel: Jaccard.</p
The numbers of probes, the numbers of sample pairs, and platforms for the 3 GEO datasets.
<p>The numbers of probes, the numbers of sample pairs, and platforms for the 3 GEO datasets.</p