Case Report of Puffinosis in a Manx Shearwater (Puffinus puffinus) Suggesting Environmental Aetiology

Publication history: Accepted - 1 December 2022; Published online - 7 December 2022Puffinosis is a disease of a range of seabirds characterised by dorsal and ventral blistering of their webbed feet, conjunctivitis, dry necrosis, leg spasticity, head shaking, loss of balance, tremors, and death. It is associated with Manx shearwaters (Puffinus puffinus), frequently affecting chicks within their underground nesting burrows. The aetiology of the disease is unclear but has been attributed to a type-2 coronavirus associated with Neotombicula mites as a potential vector. However, there is some uncertainty given potential laboratory contamination with mouse hepatitis virus and failure to fulfil Koch’s postulates, with birds injected with isolates remaining healthy. We describe a detailed case report of puffinosis in a Manx Shearwater covering necropsy, histology, bacteriology, and metagenomics including viral sequencing. We found no evidence of viral infection or parasites. Our results are consistent with an entirely environmental aetiology, with caustic faecal ammonia in damp nesting burrows causing conjunctivitis and foot dermatitis breaking the skin, allowing common soil bacteria (i.e., Flavobacterium, Staphylococcus and Serratia spp., Clostridia perfringens and Enterococcus faecalis) to cause opportunistic infection, debilitating the bird and leading to death. A similar condition (foot pad dermatitis or FPD) has been reported in broiler chickens, attributed to caustic faeces, high humidity, and poor environmental conditions during indoor rearing, preventable by adequate ventilation and husbandry. This is consistent with puffinosis being observed in Shearwater nesting burrows situated in tall, dense, vegetation (e.g., bracken Pteridium aquilinum) but rarely reported in burrows situated in well-ventilated, short coastal grasslands. This proposed environmental aetiology accounts for the disease’s non-epizootic prevalence, spatial variation within colonies, and higher frequency in chicks that are restricted to nesting burrows.Niamh Esmonde was supported by a UKRI QUADRAT Doctoral Training Programme (DTP) studentship, grant number NE/S007377/1 funded by the Natural Environment Research Council (NERC). The Agri-Food and Biosciences Institute (AFBI) funded the costs of necropsy, histology, bacteriology, parasitology, and metagenomics as part of the Queen’s–AFBI Alliance. Jignasha Patel, who conducted the metagenomics, was funded by the Research Leaders 2025 Programme cofounded by Teagasc and the European Union Horizon 2020 Research and Innovation Programme under a Marie Skłodowska-Curie grant (grant 754380). Paris Jaggers was supported by a UKRI NERC scholarship (grant NE/S007474/1)

Climate change drives migratory range shift via individual plasticity in shearwaters.

How individual animals respond to climate change is key to whether populations will persist or go extinct. Yet, few studies investigate how changes in individual behavior underpin these population-level phenomena. Shifts in the distributions of migratory animals can occur through adaptation in migratory behaviors, but there is little understanding of how selection and plasticity contribute to population range shift. Here, we use long-term geolocator tracking of Balearic shearwaters (Puffinus mauretanicus) to investigate how year-to-year changes in individual birds' migrations underpin a range shift in the post-breeding migration. We demonstrate a northward shift in the post-breeding range and show that this is brought about by individual plasticity in migratory destination, with individuals migrating further north in response to changes in sea-surface temperature. Furthermore, we find that when individuals migrate further, they return faster, perhaps minimizing delays in return to the breeding area. Birds apparently judge the increased distance that they will need to migrate via memory of the migration route, suggesting that spatial cognitive mechanisms may contribute to this plasticity and the resulting range shift. Our study exemplifies the role that individual behavior plays in populations' responses to environmental change and highlights some of the behavioral mechanisms that might be key to understanding and predicting species persistence in response to climate change

How might magnetic secular variation impact avian philopatry?

A tendency to return to the natal/breeding site, ‘philopatry’, is near ubiquitous amongst migratory birds. It has long been suggested that a magnetic ‘map’ could underpin such movements, though it is unclear how a magnetic map might be impacted by gradual drift in the Earth’s magnetic field (‘secular variation’). Here, using the International Geomagnetic Reference Field, we quantified how secular variation translates to movement in the implied positions at which combinations of different magnetic cues (inclination, declination and intensity) intersect, noting that the magnitude of such movements is determined by the acute intersection angle between the isolines in question, and the direction of one isoline’s movement relative to the other. We propose that magnetic parameters varying in a near-parallel arrangement are unlikely to be used as a bi-coordinate map during philopatry, but that birds could use near-orthogonal magnetic gradient cues as a bi-coordinate map if augmented with navigation using more local cues. We further suggest that the use of uni-coordinate magnetic information may provide a philopatry mechanism that is substantially less impacted by secular variation than a bi-coordinate ‘map’. We propose that between-year shifts in the position of magnetic coordinates might provide a priori predictions for changes in the breeding sites of migratory birds

Case report of puffinosis in a Manx Shearwater (Puffinus puffinus) suggesting environmental aetiology

Puffinosis is a disease of a range of seabirds characterised by dorsal and ventral blistering of their webbed feet, conjunctivitis, dry necrosis, leg spasticity, head shaking, loss of balance, tremors, and death. It is associated with Manx shearwaters (Puffinus puffinus), frequently affecting chicks within their underground nesting burrows. The aetiology of the disease is unclear but has been attributed to a type-2 coronavirus associated with Neotombicula mites as a potential vector. However, there is some uncertainty given potential laboratory contamination with mouse hepatitis virus and failure to fulfil Koch’s postulates, with birds injected with isolates remaining healthy. We describe a detailed case report of puffinosis in a Manx Shearwater covering necropsy, histology, bacteriology, and metagenomics including viral sequencing. We found no evidence of viral infection or parasites. Our results are consistent with an entirely environmental aetiology, with caustic faecal ammonia in damp nesting burrows causing conjunctivitis and foot dermatitis breaking the skin, allowing common soil bacteria (i.e., Flavobacterium, Staphylococcus and Serratia spp., Clostridia perfringens and Enterococcus faecalis) to cause opportunistic infection, debilitating the bird and leading to death. A similar condition (foot pad dermatitis or FPD) has been reported in broiler chickens, attributed to caustic faeces, high humidity, and poor environmental conditions during indoor rearing, preventable by adequate ventilation and husbandry. This is consistent with puffinosis being observed in Shearwater nesting burrows situated in tall, dense, vegetation (e.g., bracken Pteridium aquilinum) but rarely reported in burrows situated in well-ventilated, short coastal grasslands. This proposed environmental aetiology accounts for the disease’s non-epizootic prevalence, spatial variation within colonies, and higher frequency in chicks that are restricted to nesting burrows