Evaluation of phylogenetic footprint discovery for predicting bacterial cis-regulatory elements and revealing their evolution-3

<p><b>Copyright information:</b></p><p>Taken from "Evaluation of phylogenetic footprint discovery for predicting bacterial cis-regulatory elements and revealing their evolution"</p><p>http://www.biomedcentral.com/1471-2105/9/37</p><p>BMC Bioinformatics 2008;9():37-37.</p><p>Published online 23 Jan 2008</p><p>PMCID:PMC2248561.</p><p></p>d column shows motifs detected in subsets corresponding to narrower taxa: Actinobacteria (B), Cyanobacteria (C), Firmicutes (D), Alpha-Proteobacteria (E), Beta-Proteobacteria (F), Delta-Proteobacteria (G), Gamma-Proteobacteria (H). The maps displays all dyads with a significance >= 2

Evaluation of phylogenetic footprint discovery for predicting bacterial cis-regulatory elements and revealing their evolution-0

<p><b>Copyright information:</b></p><p>Taken from "Evaluation of phylogenetic footprint discovery for predicting bacterial cis-regulatory elements and revealing their evolution"</p><p>http://www.biomedcentral.com/1471-2105/9/37</p><p>BMC Bioinformatics 2008;9():37-37.</p><p>Published online 23 Jan 2008</p><p>PMCID:PMC2248561.</p><p></p>ht proportional to the significance score. The maps displays all dyads with a significance >= 2

Evaluation of phylogenetic footprint discovery for predicting bacterial cis-regulatory elements and revealing their evolution-1

<p><b>Copyright information:</b></p><p>Taken from "Evaluation of phylogenetic footprint discovery for predicting bacterial cis-regulatory elements and revealing their evolution"</p><p>http://www.biomedcentral.com/1471-2105/9/37</p><p>BMC Bioinformatics 2008;9():37-37.</p><p>Published online 23 Jan 2008</p><p>PMCID:PMC2248561.</p><p></p>ia [78]; Gram-positives [48, 79, 80]. Sequence logos were generated with Weblogo [81] from the alignment of the annotated sites. The sequence logo was obtained from annotated sites in RegulonDB [82, 43]

Evaluation of phylogenetic footprint discovery for predicting bacterial cis-regulatory elements and revealing their evolution-5

<p><b>Copyright information:</b></p><p>Taken from "Evaluation of phylogenetic footprint discovery for predicting bacterial cis-regulatory elements and revealing their evolution"</p><p>http://www.biomedcentral.com/1471-2105/9/37</p><p>BMC Bioinformatics 2008;9():37-37.</p><p>Published online 23 Jan 2008</p><p>PMCID:PMC2248561.</p><p></p>ia [78]; Gram-positives [48, 79, 80]. Sequence logos were generated with Weblogo [81] from the alignment of the annotated sites. The sequence logo was obtained from annotated sites in RegulonDB [82, 43]