Electrified externally heated rotary calciner for calcination of cement raw meal

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Optimal non-circular fiber geometries for image scrambling in high-resolution spectrographs

Optical fibers are a key component for high-resolution spectrographs to attain high precision in radial velocity measurements. We present a custom fiber with a novel core geometry - a 'D'-shape. From a theoretical standpoint, such a fiber should provide superior scrambling and modal noise mitigation, since unlike the commonly used circular and polygonal fiber cross sections, it shows chaotic scrambling. We report on the fabrication process of a test fiber and compare the optical properties, scrambling performance, and modal noise behavior of the D-fiber with those of common polygonal fibers.Comment: 7 pages, 6 figures, submitted to SPIE Astronomical Telescopes & Instrumentation 2016 (9912-192

Quality control for terms and definitions in ontologies and taxonomies

BACKGROUND: Ontologies and taxonomies are among the most important computational resources for molecular biology and bioinformatics. A series of recent papers has shown that the Gene Ontology (GO), the most prominent taxonomic resource in these fields, is marked by flaws of certain characteristic types, which flow from a failure to address basic ontological principles. As yet, no methods have been proposed which would allow ontology curators to pinpoint flawed terms or definitions in ontologies in a systematic way. RESULTS: We present computational methods that automatically identify terms and definitions which are defined in a circular or unintelligible way. We further demonstrate the potential of these methods by applying them to isolate a subset of 6001 problematic GO terms. By automatically aligning GO with other ontologies and taxonomies we were able to propose alternative synonyms and definitions for some of these problematic terms. This allows us to demonstrate that these other resources do not contain definitions superior to those supplied by GO. CONCLUSION: Our methods provide reliable indications of the quality of terms and definitions in ontologies and taxonomies. Further, they are well suited to assist ontology curators in drawing their attention to those terms that are ill-defined. We have further shown the limitations of ontology mapping and alignment in assisting ontology curators in rectifying problems, thus pointing to the need for manual curation

Extragradient Type Methods for Riemannian Variational Inequality Problems

Riemannian convex optimization and minimax optimization have recently drawn considerable attention. Their appeal lies in their capacity to adeptly manage the non-convexity of the objective function as well as constraints inherent in the feasible set in the Euclidean sense. In this work, we delve into monotone Riemannian Variational Inequality Problems (RVIPs), which encompass both Riemannian convex optimization and minimax optimization as particular cases. In the context of Euclidean space, it is established that the last-iterates of both the extragradient (EG) and past extragradient (PEG) methods converge to the solution of monotone variational inequality problems at a rate of $O\left(\frac{1}{\sqrt{T}}\right)$ (Cai et al., 2022). However, analogous behavior on Riemannian manifolds remains an open question. To bridge this gap, we introduce the Riemannian extragradient (REG) and Riemannian past extragradient (RPEG) methods. We demonstrate that both exhibit $O\left(\frac{1}{\sqrt{T}}\right)$ last-iterate convergence. Additionally, we show that the average-iterate convergence of both REG and RPEG is $O\left(\frac{1}{{T}}\right)$, aligning with observations in the Euclidean case (Mokhtari et al., 2020). These results are enabled by judiciously addressing the holonomy effect so that additional complications in Riemannian cases can be reduced and the Euclidean proof inspired by the performance estimation problem (PEP) technique or the sum-of-squares (SOS) technique can be applied again

Opening Access to Visual Exploration of Audiovisual Digital Biomarkers: an OpenDBM Analytics Tool

Digital biomarkers (DBMs) are a growing field and increasingly tested in the therapeutic areas of psychiatric and neurodegenerative disorders. Meanwhile, isolated silos of knowledge of audiovisual DBMs use in industry, academia, and clinics hinder their widespread adoption in clinical research. How can we help these non-technical domain experts to explore audiovisual digital biomarkers? The use of open source software in biomedical research to extract patient behavior changes is growing and inspiring a shift toward accessibility to address this problem. OpenDBM integrates several popular audio and visual open source behavior extraction toolkits. We present a visual analysis tool as an extension of the growing open source software, OpenDBM, to promote the adoption of audiovisual DBMs in basic and applied research. Our tool illustrates patterns in behavioral data while supporting interactive visual analysis of any subset of derived or raw DBM variables extracted through OpenDBM.Comment: 6 pages, 2 figures, 2022 IEEE VIS Workshop - Visualization in BioMedical A