Multifractal Dimensions for Branched Growth

A recently proposed theory for diffusion-limited aggregation (DLA), which models this system as a random branched growth process, is reviewed. Like DLA, this process is stochastic, and ensemble averaging is needed in order to define multifractal dimensions. In an earlier work [T. C. Halsey and M. Leibig, Phys. Rev. A46, 7793 (1992)], annealed average dimensions were computed for this model. In this paper, we compute the quenched average dimensions, which are expected to apply to typical members of the ensemble. We develop a perturbative expansion for the average of the logarithm of the multifractal partition function; the leading and sub-leading divergent terms in this expansion are then resummed to all orders. The result is that in the limit where the number of particles n -> \infty, the quenched and annealed dimensions are {\it identical}; however, the attainment of this limit requires enormous values of n. At smaller, more realistic values of n, the apparent quenched dimensions differ from the annealed dimensions. We interpret these results to mean that while multifractality as an ensemble property of random branched growth (and hence of DLA) is quite robust, it subtly fails for typical members of the ensemble.Comment: 82 pages, 24 included figures in 16 files, 1 included tabl

A Novel Unsupervised Method to Identify Genes Important in the Anti-viral Response: Application to Interferon/Ribavirin in Hepatitis C Patients

Background: Treating hepatitis C with interferon/ribavirin results in a varied response in terms of decrease in viral titer and ultimate outcome. Marked responders have a sharp decline in viral titer within a few days of treatment initiation, whereas in other patients there is no effect on the virus (poor responders). Previous studies have shown that combination therapy modifies expression of hundreds of genes in vitro and in vivo. However, identifying which, if any, of these genes have a role in viral clearance remains challenging. Aims: The goal of this paper is to link viral levels with gene expression and thereby identify genes that may be responsible for early decrease in viral titer. Methods: Microarrays were performed on RNA isolated from PBMC of patients undergoing interferon/ribavirin therapy. Samples were collected at pre-treatment (day 0), and 1, 2, 7, 14 and 28 days after initiating treatment. A novel method was applied to identify genes that are linked to a decrease in viral titer during interferon/ribavirin treatment. The method uses the relationship between inter-patient gene expression based proximities and inter-patient viral titer based proximities to define the association between microarray gene expression measurements of each gene and viral-titer measurements. Results: We detected 36 unique genes whose expressions provide a clustering of patients that resembles viral titer based clustering of patients. These genes include IRF7, MX1, OASL and OAS2, viperin and many ISG's of unknown function. Conclusion: The genes identified by this method appear to play a major role in the reduction of hepatitis C virus during the early phase of treatment. The method has broad utility and can be used to analyze response to any group of factors influencing biological outcome such as antiviral drugs or anti-cancer agents where microarray data are available. © 2007 Brodsky et al

Active Tension Network model suggests an exotic mechanical state realized in epithelial tissues.

Mechanical interactions play a crucial role in epithelial morphogenesis, yet understanding the complex mechanisms through which stress and deformation affect cell behavior remains an open problem. Here we formulate and analyze the Active Tension Network (ATN) model, which assumes that the mechanical balance of cells within a tissue is dominated by cortical tension and introduces tension-dependent active remodeling of the cortex. We find that ATNs exhibit unusual mechanical properties. Specifically, an ATN behaves as a fluid at short times, but at long times supports external tension like a solid. Furthermore, an ATN has an extensively degenerate equilibrium mechanical state associated with a discrete conformal - "isogonal" - deformation of cells. The ATN model predicts a constraint on equilibrium cell geometries, which we demonstrate to approximately hold in certain epithelial tissues. We further show that isogonal modes are observed in the fruit y embryo, accounting for the striking variability of apical areas of ventral cells and helping understand the early phase of gastrulation. Living matter realizes new and exotic mechanical states, the study of which helps to understand biological phenomena

Random Exchange Quantum Heisenberg Chains

The one-dimensional quantum Heisenberg model with random $\pm J$ bonds is studied for $S=\frac{1}{2}$ and $S=1$. The specific heat and the zero-field susceptibility are calculated by using high-temperature series expansions and quantum transfer matrix method. The susceptibility shows a Curie-like temperature dependence at low temperatures as well as at high temperatures. The numerical results for the specific heat suggest that there are anomalously many low-lying excitations. The qualitative nature of these excitations is discussed based on the exact diagonalization of finite size systems.Comment: 13 pages, RevTex, 12 figures available on request ([email protected]

求職者の人物評価に影響するエントリーシートのストーリー性と自己呈示方略

We conducted a scenario experiment to investigate the effects of both of self-presentation style and story-telling style about experiences of past failures, on the evaluations of job applicants. Participants (N = 95) read one of four types of application forms which were constructed by combining one of two stories with or without self-discovery through past failure, and one of two self-presentation styles: self-enhancing or self-effacing. Then, impressions about the applicant, such as intimacy, ability, sincerity, obedience, decency, and attractiveness as an in-group member were evaluated. The results indicated that self-enhancing presentations had a positive effect on evaluations of an applicant\u27s ability, and a negative effect on evaluations of intimacy. Moreover, stories of self-discovery had a positive effect on attractiveness of the applicant as an in-group member. Furthermore, there was an interactive effect between the story-telling and self-presentation styles on evaluation of an applicant\u27s decency. We have discussed the effects of self-effacing presentations on the new graduate job-hunting system in Japan

HCV IRES manipulates the ribosome to promote the switch from translation initiation to elongation.

The internal ribosome entry site (IRES) of the hepatitis C virus (HCV) drives noncanonical initiation of protein synthesis necessary for viral replication. Functional studies of the HCV IRES have focused on 80S ribosome formation but have not explored its role after the 80S ribosome is poised at the start codon. Here, we report that mutations of an IRES domain that docks in the 40S subunit's decoding groove cause only a local perturbation in IRES structure and result in conformational changes in the IRES-rabbit 40S subunit complex. Functionally, the mutations decrease IRES activity by inhibiting the first ribosomal translocation event, and modeling results suggest that this effect occurs through an interaction with a single ribosomal protein. The ability of the HCV IRES to manipulate the ribosome provides insight into how the ribosome's structure and function can be altered by bound RNAs, including those derived from cellular invaders

A Type System for Unstructured Locking that Guarantees Deadlock Freedom without Imposing a Lock Ordering

Deadlocks occur in concurrent programs as a consequence of cyclic resource acquisition between threads. In this paper we present a novel type system that guarantees deadlock freedom for a language with references, unstructured locking primitives, and locks which are implicitly associated with references. The proposed type system does not impose a strict lock acquisition order and thus increases programming language expressiveness.Comment: In Proceedings PLACES 2010, arXiv:1110.385

The non-coding landscape of head and neck squamous cell carcinoma

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