The Bacterial Intimins and Invasins: A Large and Novel Family of Secreted Proteins

Gram-negative bacteria have developed a limited repertoire of solutions for secreting proteins from the cytoplasmic compartment to the exterior of the cell. Amongst the spectrum of secreted proteins are the intimins and invasins (the Int/Inv family; TC# 1.B.54) which are characterized by an N-terminal β-barrel domain and a C-terminal surface localized passenger domain. Despite the important role played by members of this family in diseases mediated by several species of the Enterobacteriaceae, there has been little appreciation for the distribution and diversity of these proteins amongst Gram-negative bacteria. Furthermore, there is little understanding of the molecular events governing secretion of these proteins to the extracellular milieu.In silico approaches were used to analyze the domain organization and diversity of members of this secretion family. Proteins belonging to this family are predominantly associated with organisms from the γ-proteobacteria. Whilst proteins from the Chlamydia, γ-, β- and ε-proteobacteria possess β-barrel domains and passenger domains of various sizes, Int/Inv proteins from the α-proteobacteria, cyanobacteria and chlorobi possess only the predicted β-barrel domains. Phylogenetic analyses revealed that with few exceptions these proteins cluster according to organismal type, indicating that divergence occurred contemporaneously with speciation, and that horizontal transfer was limited. Clustering patterns of the β-barrel domains correlate well with those of the full-length proteins although the passenger domains do so with much less consistency. The modular subdomain design of the passenger domains suggests that subdomain duplication and deletion have occurred with high frequency over evolutionary time. However, all repeated subdomains are found in tandem, suggesting that subdomain shuffling occurred rarely if at all. Topological predictions for the β-barrel domains are presented.Based on our in silico analyses we present a model for the biogenesis of these proteins. This study is the first of its kind to describe this unusual family of bacterial adhesins

Changes in sub-fossil chironomid assemblages in two Northern Patagonian lake systems associated with the occurrence of historical fires

Patagonia is commonly seen as an exceptionally pristine area because of its wildlife and practically unpolluted waters. However, during the twentieth century the burning of natural forests was one of the most important human activities in Northern Chilean Patagonia. Some estimations indicate that three million hectares were burned during the first three decades of the century. Hence the objective of this study was to evaluate the impacts of the historical fires in Lake Burgos (458420S) and Lake Thompson (458380S) in Chilean Patagonia. The impact was measured by evaluating chironomid assemblage since they are sensitive enough to be used as an indicator of aquatic ecosystem health. Fires have a direct and drastic effect on a lake watershed but also indirectly affect a lake ecosystem, changing sedimentation patterns or increasing nutrient inputs. In the studied lakes the periods with higher prevalence of fires were identified by charcoal analysis, while organic matter and magnetic susceptibility allowed the confirmation of pre-fire and post-fire periods. The chironomid composition was evaluated through a PCA and an analysis of similarity (ANOSIM) to test the significance among periods while a Detrended Correspondence Analysis was applied to the chironomid assemblage downcore to assess compositional structure and taxa turnover. In Lake Burgos the ANOSIM test indicated significant differences between the pre-fire and fire periods (p\0.05), while in Lake Thompson differences were not significant. However, in Lake Thompson the PCA clearly separated the pre-fire from the fire period but not the fire from the post-fire periods. In both lakes chironomid composition changed in relation to the period of higher prevalence of fires, which in turn implies catchment changes, pollution, and other anthropogenic impacts. Particularly a marked change in mesotrophic/eutrophic taxa was detected, reflecting an increase in nutrient input due to deforestation. Our findings point out that the lacustrine ecosystems are still affected by the impact of fires and the subsequent increase in nutrient supply that occurred almost 50 years ago. No sign of reverting to pre-disturbance conditions was observed, which makes these lakes highly sensitive to current human-induced impacts

B Cell Immunosenescence

Innate and adaptive immune responses decline with age, leading to greater susceptibility to infectious diseases and reduced responses to vaccines. Diseases are more severe in old than in young individuals and have a greater impact on health outcomes such as morbidity, disability, and mortality. Aging is characterized by increased low-grade chronic inflammation, so-called inflammaging, that represents a link between changes in immune cells and a number of diseases and syndromes typical of old age. In this review we summarize current knowledge on age-associated changes in immune cells with special emphasis on B cells, which are more inflammatory and less responsive to infections and vaccines in the elderly. We highlight recent findings on factors and pathways contributing to inflammaging and how these lead to dysfunctional immune responses. We summarize recent published studies showing that adipose tissue, which increases in size with aging, contributes to inflammaging and dysregulated B cell function