Meaning and Dialogue Coherence: A Proof-theoretic Investigation

This paper presents a novel proof-theoretic account of dialogue coherence. It focuses on an abstract class of cooperative information-oriented dialogues and describes how their structure can be accounted for in terms of a multi-agent hybrid inference system that combines natural deduction with information transfer and observation. We show how certain dialogue structures arise out of the interplay between the inferential roles of logical connectives (i.e., sentence semantics), a rule for transferring information between agents, and a rule for information flow between agents and their environment. The order of explanation is opposite in direction to that adopted in game-theoretic semantics, where sentence semantics (or a notion of valid inference) is derived from winning dialogue strategies. That approach and the current one may, however, be reconcilable, since we focus on cooperative dialogue, whereas the game-theoretic tradition concentrates on adversarial dialogue

Photon-pair generation in photonic crystal fibre with a 1.5 GHz modelocked VECSEL

Four-wave mixing (FWM) in optical fibre is a leading technique for generating high-quality photon pairs. We report the generation of photon pairs by spontaneous FWM in photonic crystal fibre pumped by a 1.5 GHz repetition-rate vertical-external-cavity surface-emitting laser (VECSEL). The photon pairs exhibit high count rates and a coincidence-to-accidental ratio of over 80. The VECSEL's high repetition-rate, high average power, tunability, and small footprint make this an attractive source for quantum key distribution and photonic quantum-state engineering.Comment: 17 Pages, 5 Figure

De Novo Sequence and Copy Number Variants Are Strongly Associated with Tourette Disorder and Implicate Cell Polarity in Pathogenesis.

We previously established the contribution of de novo damaging sequence variants to Tourette disorder (TD) through whole-exome sequencing of 511 trios. Here, we sequence an additional 291 TD trios and analyze the combined set of 802 trios. We observe an overrepresentation of de novo damaging variants in simplex, but not multiplex, families; we identify a high-confidence TD risk gene, CELSR3 (cadherin EGF LAG seven-pass G-type receptor 3); we find that the genes mutated in TD patients are enriched for those related to cell polarity, suggesting a common pathway underlying pathobiology; and we confirm a statistically significant excess of de novo copy number variants in TD. Finally, we identify significant overlap of de novo sequence variants between TD and obsessive-compulsive disorder and de novo copy number variants between TD and autism spectrum disorder, consistent with shared genetic risk

Early paleocene paleoceanography and export productivity in the Chicxulub crater

The Chicxulub impact caused a crash in productivity in the world''s oceans which contributed to the extinction of ~75% of marine species. In the immediate aftermath of the extinction, export productivity was locally highly variable, with some sites, including the Chicxulub crater, recording elevated export production. The long-term transition back to more stable export productivity regimes has been poorly documented. Here, we present elemental abundances, foraminifer and calcareous nannoplankton assemblage counts, total organic carbon, and bulk carbonate carbon isotope data from the Chicxulub crater to reconstruct changes in export productivity during the first 3 Myr of the Paleocene. We show that export production was elevated for the first 320 kyr of the Paleocene, declined from 320 kyr to 1.2 Myr, and then remained low thereafter. A key interval in this long decline occurred 900 kyr to 1.2 Myr post impact, as calcareous nannoplankton assemblages began to diversify. This interval is associated with fluctuations in water column stratification and terrigenous flux, but these variables are uncorrelated to export productivity. Instead, we postulate that the turnover in the phytoplankton community from a post-extinction assemblage dominated by picoplankton (which promoted nutrient recycling in the euphotic zone) to a Paleocene pelagic community dominated by relatively larger primary producers like calcareous nannoplankton (which more efficiently removed nutrients from surface waters, leading to oligotrophy) is responsible for the decline in export production in the southern Gulf of Mexico. © 2021. American Geophysical Union. All Rights Reserved

Life and death in the Chicxulub impact crater: A record of the Paleocene-Eocene Thermal Maximum

Thermal stress on the biosphere during the extreme warmth of the Paleocene-Eocene Thermal Maximum (PETM) was most severe at low latitudes, with sea surface temperatures at some localities exceeding the 35 C at which marine organisms experience heat stress. Relatively few equivalent terrestrial sections have been identified, and the response of land plants to this extreme heat is still poorly understood. Here, we present a new record of the PETM from the peak ring of the Chicxulub impact crater that has been identified based on nannofossil biostratigraphy, an acme of the dinoflagellate genus Apectodinium, and a negative carbon isotope excursion. Geochemical and microfossil proxies show that the PETM is marked by elevated TEXH 86-based sea surface temperatures (SSTs) averaging 37:8 C, an in- crease in terrestrial input and surface productivity, salinity stratification, and bottom water anoxia, with biomarkers for green and purple sulfur bacteria indicative of photic zone euxinia in the early part of the event. Pollen and plants spores in this core provide the first PETM floral assemblage described from Mexico, Central America, and the northern Caribbean. The source area was a diverse coastal shrubby tropical forest with a remarkably high abundance of fungal spores, indicating humid conditions. Thus, while seafloor anoxia devastated the benthic marine biota and dinoflagellate assemblages were heat-stressed, the terrestrial plant ecosystem thrived

Investigation of previously implicated genetic variants in chronic tic disorders: a transmission disequilibrium test approach

Genetic studies in Tourette syndrome (TS) are characterized by scattered and poorly replicated findings. We aimed to replicate findings from candidate gene and genome-wide association studies (GWAS). Our cohort included 465 probands with chronic tic disorder (93% TS) and both parents from 412 families (some probands were siblings). We assessed 75 single nucleotide polymorphisms (SNPs) in 465 parent–child trios; 117 additional SNPs in 211 trios; and 4 additional SNPs in 254 trios. We performed SNP and gene-based transmission disequilibrium tests and compared nominally significant SNP results with those from a large independent case–control cohort. After quality control 71 SNPs were available in 371 trios; 112 SNPs in 179 trios; and 3 SNPs in 192 trios. 17 were candidate SNPs implicated in TS and 2 were implicated in obsessive–compulsive disorder (OCD) or autism spectrum disorder (ASD); 142 were tagging SNPs from eight monoamine neurotransmitter-related genes (including dopamine and serotonin); 10 were top SNPs from TS GWAS; and 13 top SNPs from attention-deficit/hyperactivity disorder, OCD, or ASD GWAS. None of the SNPs or genes reached significance after adjustment for multiple testing. We observed nominal significance for the candidate SNPs rs3744161 (TBCD) and rs4565946 (TPH2) and for five tagging SNPs; none of these showed significance in the independent cohort. Also, SLC1A1 in our gene-based analysis and two TS GWAS SNPs showed nominal significance, rs11603305 (intergenic) and rs621942 (PICALM). We found no convincing support for previously implicated genetic polymorphisms. Targeted re-sequencing should fully appreciate the relevance of candidate genes

Synaptic processes and immune-related pathways implicated in Tourette syndrome.

Tourette syndrome (TS) is a neuropsychiatric disorder of complex genetic architecture involving multiple interacting genes. Here, we sought to elucidate the pathways that underlie the neurobiology of the disorder through genome-wide analysis. We analyzed genome-wide genotypic data of 3581 individuals with TS and 7682 ancestry-matched controls and investigated associations of TS with sets of genes that are expressed in particular cell types and operate in specific neuronal and glial functions. We employed a self-contained, set-based association method (SBA) as well as a competitive gene set method (MAGMA) using individual-level genotype data to perform a comprehensive investigation of the biological background of TS. Our SBA analysis identified three significant gene sets after Bonferroni correction, implicating ligand-gated ion channel signaling, lymphocytic, and cell adhesion and transsynaptic signaling processes. MAGMA analysis further supported the involvement of the cell adhesion and trans-synaptic signaling gene set. The lymphocytic gene set was driven by variants in FLT3, raising an intriguing hypothesis for the involvement of a neuroinflammatory element in TS pathogenesis. The indications of involvement of ligand-gated ion channel signaling reinforce the role of GABA in TS, while the association of cell adhesion and trans-synaptic signaling gene set provides additional support for the role of adhesion molecules in neuropsychiatric disorders. This study reinforces previous findings but also provides new insights into the neurobiology of TS

Identifying mismatches between habitat selection and habitat quality in a ground-nesting farmland bird

Human-induced habitat changes often generate novel or radically altered habitat characteristics, which can impair the ability of organisms to differentiate between suitable and unsuitable sites. This phenomenon, often termed an ecological trap, has been identified as a potential driver of biodiversity loss worldwide. However, few unequivocal examples have been documented, even in agricultural environments where contemporary habitat changes have been rapid and significant. Several problems complicate the detection of ecological traps in the field, including difficulties in measuring key parameters such as relative habitat preference. Here, we assess habitat selection preferences and breeding success of the yellow wagtail Motacilla flava, a UK red-listed declining passerine, in arable farmland. We combine habitat-specific density indices with measures of home range exclusivity to make inferences on relative habitat preference that are robust to the confounding effect of competitive exclusion. Using multiple measures of breeding success, we identify maladaptive habitat selection patterns at the scale of both territory and nest site choice. Yellow wagtails showed a preference for establishing territories within field bean crops, but subsequently suffered high nest predation rates. Similarly, pairs showed a preference for nesting close to tramlines within cereal fields, but nests further from tramlines achieved higher success due to lower predation rates. We found no evidence of competitive exclusion among neighbouring pairs, suggesting that density-based indices provided an accurate reflection of relative habitat preferences. Our findings highlight the potential role of maladaptive habitat selection in suppressing breeding success among farmland species

Mid-season shifts in the habitat associations of Yellow Wagtails Motacilla flava breeding in arable farmland

Declines in habitat quality through the breeding season within a bird's home-range can limit overall productivity. In environments where multiple breeding opportunities arise during the course of a season, these effects can be buffered by a shift to different breeding sites or habitats. We studied the distribution and habitat associations of a crop-nesting farmland bird, the Yellow Wagtail Motacilla flava, across an arable-dominated farming region in eastern England using both field-scale territory mapping and large-scale transect surveys. Surveys were repeated at monthly intervals to measure changes in both distribution and habitat use during the course of the season. The distribution of breeding birds changed markedly at both regional and field-scales, coinciding with a shift in crop preference. Initially, most territorial birds were recorded in autumn-sown cereal fields, but this crop was subsequently abandoned in favour of potato crops, which were more patchily distributed. Other habitat features influencing Yellow Wagtail distribution included local crop diversity, hedgerow presence and soil type, with organic soils supporting higher abundance than alluvial clays or silts. The mid-season switch in habitat associations might allow individuals to maximize the number of breeding attempts made in a single year by using multiple habitats sequentially. The use of multiple habitats could influence population regulation by buffering the effects of local within-season declines in habitat suitability. Seasonal habitat switching may be more prevalent than is currently recognized in seasonal environments