26 research outputs found
Separation of Enantiomers through Local Vorticity: A Screw Model Mechanism
We present a model to explain the mechanism behind enantiomeric separation under either shear flow or local rotational motion in a fluid. Local vorticity of the fluid imparts molecular rotation that couples to translational motion, sending enantiomers in opposite directions. Translation-rotation coupling of enantiomers is explored using the molecular hydrodynamic resistance tensor, and a molecular equivalent of the pitch of a screw is introduced to describe the degree of translation-rotation coupling. Molecular pitch is a structural feature of the molecules and can be easily computed, allowing rapid estimation of the pitch of 85 drug-like molecules. Simulations of model enantiomers in a range of fluids such as - and -Ru(bpy)_3]Cl_2 in water and (R,R)- and (S,S)-atorvastatin in methanol support predictions made using molecular pitch values.A competition model and continuum drift diffusion equations are developed to predict separation of realistic racemic mixtures. We find that enantiomeric separation on a centimeter length scale can be achieved in hours, using experimentally-achievable vorticities. Additionally, we find that certain achiral objects can also exhibit a non-zero molecular pitch
Thermal Transport in Citrate-Capped Gold Interfaces using a Polarizable Force Field
The interfacial thermal conductance from solvated gold nanostructures capped with sodium citrate was determined using reverse nonequilibrium molecular dynamics (RNEMD) methods. The surfaces of spherical nanoparticles and the (111) surfaces of fcc gold slabs were modeled using the density readjusting embedded atom method (DR-EAM) as well as with the standard embedded atom method (EAM), and the effects of polarizability on the binding preferences of citrate were determined. We find that the binding configurations of citrate depend significantly on gold surface curvature and are not strongly influenced by surface polarizability. The interfacial thermal conductance was also determined for the spherical nanoparticles and (111) surfaces, and we find that applying DR-EAM increases the interfacial thermal conductance for systems with spherical nanoparticles much more sharply than for systems with (111) surfaces. Through analysis of excess charge density near the interface, we find that inclusion of polarizability has a larger impact on image charge creation in nanospheres than it does for the planar (111) interfaces. This effectively increases the interaction strength to polar species in the solvent, yielding larger interfacial thermal conductance estimates for the nanospheres
Random Sequential Adsorption Model for the Differential Coverage of Gold (111) Surfaces by Two Related Silicon Phthalocyanines â€
Thermal Transport is Influenced by Nanoparticle Morphology: A Molecular Dynamics Study
Molecular dynamics
simulations were performed to model the interfacial
thermal conductance (<i>G</i>) from bare gold nanoparticles
(icosahedral, cuboctahedral, and spherical) to a hexane solvent. The
computed conductance was found to depend not only on particle shape,
but also on the size of the nanoparticles, particularly for nanospheres.
These results are compared with conductance out of the planar facets:
(111), (100), and (110); all commonly exhibited in small patches on
the spherical particles. Undercoordination of the surface atoms and
the vibrational density of states in the icosahedra explain some of
these observations. The exposed surfaces of icosahedral particles
are dominated by (111) facets with 9-coordinated gold atoms. Cuboctahedral
particles are dominated by the (100) and (111) facets with 8- and
9-coordinated surface atoms, respectively. The nanospheres approach
a constant surface density of 6–9 coordinated sites at large
particle sizes, and these surface atoms play a large role in the conductance
to the solvent. The surface-normal vibrational densities of states
were used to explain a simple surface undercoordination model, which
recovers most of the contributions to the size-dependent conductance
Why is Ice Slippery? Simulations of Shear Viscosity of the Quasi-Liquid Layer on Ice
The temperature and
depth dependence of the shear viscosity (η) of the quasi-liquid
layer (QLL) of water on ice-I<sub>h</sub> crystals was determined
using simulations of the TIP4P/Ice model. The crystals display either
the basal {0001} or prismatic {101Ì…0} facets, and we find that
the QLL viscosity depends on the presented facet, the distance from
the solid/liquid interface, and the undercooling temperature. Structural
order parameters provide two distinct estimates of the QLL widths,
which are found to range from 6.0 to 7.8 Ã…, and depend on the
facet and undercooling temperature. Above 260 K, the viscosity of
the vapor-adjacent water layer is significantly less viscous than
the solid-adjacent layer and is also lower than the viscosity of liquid
water
Friction at Ice‑I<sub>h</sub>/Water Interfaces Is Governed by Solid/Liquid Hydrogen-Bonding
Nonequilibrium
molecular dynamics simulations of solid/liquid friction
at ice/water interfaces suggest that the surface density of solid
to liquid hydrogen bonds directly correlates with interfacial friction.
The basal {0001}, prismatic {101Ì…0}, pyramidal {202Ì…1},
and secondary prism {112Ì…0} facets of ice-I<sub>h</sub> were
drawn through liquid water with a momentum flux between the solid
and liquid phases. Solid to liquid hydrogen bonds were identified
using local tetrahedral ordering of the water molecules. An expression
for friction coefficients appropriate for negative slip boundary conditions
is presented, and the computed friction of these interfaces is found
to be invariant to the shear rate and direction of shear relative
to the surface features. Structural and dynamic interfacial widths
for all four facets were found to be similar (6.6–9.5 Å
structural and 9–15 Å dynamic) and are largely independent
of the shear rate and direction. Differences in the solid to liquid
hydrogen bond density are explained in terms of surface features of
the four facets. Lastly, we present a simple momentum transmission
model using the density of solid/liquid hydrogen bonds, the shear
viscosity of the liquid, and the structural width of the interface