Quantification of the mycorrhizal fungal community associated with a modern wheat cultivar (Triticum aestivum) and with a wheat ancestor.

Abstract: Plant breeding is an important instrument to improve crop productivity. However, studies have shown that plant breeding, as well as the use of management practices such as tillage and fertilization, influence the plant root microbiome and also may have caused reduction in the genetic diversity of modern cultivars when compared to their ancestors. As the rhizosphere microbiome can profoundly impact plant growth, nutrition and health, we hypothesized that plant breeding can negatively affect the recruitment of beneficial microbes in the rhizosphere and interactions with their favorable microbial partners. A greenhouse experiment was conducted to assess the composition of the rhizosphere mycorrhizal fungi community in wheat (Triticum aestivum) varieties, modern cultivars and wheat ancestors. Plants were grown in forest and agricultural soils, collected in wheat cultivation area in São Paulo, Brazil. The DNA was extracted from rhizospheric soil collected in the flowering stage, and the r RNA 18S gene copy number of mycorrhizal fungi was determined using quantitative real-time PCR (qPCR). The bulk soil presented less mycorrhizal fungi than rhizospheric soil of modern cultivars and more than rhizospheric soil of wheat ancestors indicating that these materials can be more selective in recruiting and structuring the rhizosphere microbiome. Modern cultivars were more intensely colonized by mycorrhizal fungi compared to ancestral genotypes and therefore possibly more dependent on these microorganisms. The results do not evidence that new crop plant genotypes lost their ability to respond to mycorrhizal due to agricultural and breeding practices, and further analyses needs to be performed

Effect of phosphorus limitation on the microbial community assembly in the common bean (Phaseolus vulgaris L.) rhizosphere.

Abstract: The indiscriminate use of inputs in agricultural systems, particularly phosphate, combined with the need of growing food production, is causing the depletion of phosphorus mines around the world. In order to mitigate the environmental impact caused by phosphorus exploration microorganisms can be used to increase the efficiency of phosphorus utilization in crop systems by promoting nutrient solubilization and absorption. It is believed that low phosphorus concentration in soil, enriches specific members of the rhizosphere microbiome related to the availability of this element to the plant. In this study, a factorial experiment was performed considering contrasting cultivars in the uptake efficiency of phosphorus (being IAC-Imperador and DOR-364, the cultivar with high and low efficiency in P uptake); using soil with low P content and enriched concentrations of rock phosphate and single superphosphate. The rhizosphere microbiome was accessed using TSA and NBRIP media, to estimate total bacterial colony-forming units and identify isolates with potential of P solubilization, respectively. Total DNA was extracted and mycorrhizal fungi community was quantified using qPCR. The number of total bacteria colony-forming unit increased in the single superphosphate treatments of the IAC-Imperador (p<0.01), but not in DOR-364. Phosphorus solubilizing bacteria abundance also showed increase in single superphosphate treatments in both cultivars (p<0.01). Rock phosphate treatments did not showed any significant differences in colony-forming unit abundances. When considering the cultivar with higher efficiency in phosphorus uptake, the abundance of mycorrhizal fungi did not differed significantly. On the other hand, the lower efficient cultivar showed 5-fold increase with the addition of single superphosphate, and a 10-fold increase with rock phosphate (p<0.01). The results suggest that different type of P and the plant variety assembles the microbial community that helps plants in P uptake. The recruitment of mycorrhizal fungi is higher in the cultivar less efficient in phosphorus uptake, mainly when in the presence of phosphate rock

The Ge(001) (2 × 1) reconstruction: asymmetric dimers and multilayer relaxation observed by grazing incidence X-ray diffraction

Grazing incidence X-ray diffraction has been used to analyze in detail the atomic structure of the (2 × 1) reconstruction of the Ge(001) surface involving far reaching subsurface relaxations. Two kinds of disorder models, a statistical and a dynamical were taken into account for the data analysis, both indicating substantial disorder along the surface normal. This can only be correlated to asymmetric dimers. Considering a statistical disorder model assuming randomly oriented dimers the analysis of 13 symmetrically independent in-plane fractional order reflections and of four fractional order reciprocal lattice rods up to the maximum attainable momentum transfer qz = 3c* (c* = 1.77 × 10−1 Å−1) indicates the formation of asymmetric dimers characterized by R>D = 2.46(5) Å as compared to the bulk bonding length of R = 2.45 Å. The dimer height of Δ Z = 0.74(15) Å corresponds to a dimer buckling angle of 17(4)°. The data refinement using anisotropic thermal parameters leads to a bonding length of RD = 2.44(4) Å and to a large anisotropy of the root mean-square vibration amplitudes of the dimer atoms (u112) 1/2 = 0.25 Å, (u222)1/2 = 0.14 Å, (u332)1/2 = 0.50 Å). We have evidence for lateral and vertical disp tenth layer below the surface

Relativistically covariant state-dependent cloning of photons

The influence of the relativistic covariance requirement on the optimality of the symmetric state-dependent 1 -> 2 cloning machine is studied. Namely, given a photonic qubit whose basis is formed from the momentum-helicity eigenstates, the change to the optimal cloning fidelity is calculated taking into account the Lorentz covariance unitarily represented by Wigner's little group. To pinpoint some of the interesting results, we found states for which the optimal fidelity of the cloning process drops to 2/3 which corresponds to the fidelity of the optimal classical cloner. Also, an implication for the security of the BB84 protocol is analyzed.Comment: corrected, rewritten and accepted in PR

Composition and functionality of the wild and cultivated common bean rhizosphere microbiome.

Abstract: Plants rely on their rhizosphere microbiome for specific functions, such as, nutrient acquisition and protection against diseases. The domestication and subsequent plant breeding neglected the important role of the rhizosphere microbiome on plant performance. Here, we tested the hypothesis that ancestor materials have higher ability to host beneficial microorganisms in the rhizosphere when compared to modern cultivars. For this, we assessed the composition and functionality of the rhizosphere microbiome associated with a wild (Wild Mex) and with a cultivated (IAC Alvorada) common bean grown in highly biodiverse soil (Amazonian Dark Earth). Antagonistic bacteria were isolated from common bean rhizosphere and total rhizosphere DNA was extracted for shotgun sequencing using Illumina MiSeq. Eleven out of 104 isolated bacteria showed antagonistic in vitro activity against soil borne pathogens Rhizoctonia solani and Fusarium oxysporum f. sp. phaseoli. The bacterial isolates were identified belonging to Streptomyces, Kitasatospora, Alcaligenes, Achromobacter, Pseudomonas, Stenotrophomonas, Brevibacillus and Paenibacillus genus. The cultivation-independent approach revealed that microbial community composition in the Wild Mex bean rhizosphere was characterized by higher relative abundance of bacterial phyla Acidobacteria, Verrucomicrobia, Gemmatimonadetes and fungal phylum Glomeromycota when compared with IAC Alvorada cultivated bean, which showed a higher relative abundance of bacterial phyla Firmicutes, Planctomycetes, Deinococcus-Thermus and fungal phylum Ascomycota. Wild Mex rhizosphere microbiome showed higher relative frequency of nitrogen-fixing, nitrifying, antagonists and plant growth promoting microorganisms. The wild bean also showed higher relative abundance of functions related to nitrogen fixation, siderophore and indole acetic acid (IAA) production, when compared with IAC Alvorada bean. Ordination analysis revealed that the wild genotype is more selective in recruiting microorganisms and functions in the rhizosphere when compared with modern cultivar. In conclusion, the results revealed that domestication and plant breeding potentially undermined rhizosphere microbiome composition and functions debilitating the host?s ability to select and support beneficial microbes

A human antibody against Zika virus crosslinks the E protein to prevent infection

The recent Zika virus (ZIKV) epidemic has been linked to unusual and severe clinical manifestations including microcephaly in fetuses of infected pregnant women and Guillian-Barré syndrome in adults. Neutralizing antibodies present a possible therapeutic approach to prevent and control ZIKV infection. Here we present a 6.2 Å resolution three-dimensional cryo-electron microscopy (cryoEM) structure of an infectious ZIKV (strain H/PF/2013, French Polynesia) in complex with the Fab fragment of a highly therapeutic and neutralizing human monoclonal antibody, ZIKV-117. The antibody had been shown to prevent fetal infection and demise in mice. The structure shows that ZIKV-117 Fabs cross-link the monomers within the surface E glycoprotein dimers as well as between neighbouring dimers, thus preventing the reorganization of E protein monomers into fusogenic trimers in the acidic environment of endosomes