Activity modulation and allosteric control of a scaffolded DNAzyme using a dynamic DNA nanostructure.

Recognition of the fundamental importance of allosteric regulation in biology dates back to not long after its discovery in the 1960s. Our ability to rationally engineer this potentially useful property into normally non-allosteric catalysts, however, remains limited. In response we report a DNA nanotechnology-enabled approach for introducing allostery into catalytic nucleic acids. Specifically, we have grafted one or two copies of a peroxidase-like DNAzyme, hemin-bound G-quadruplex (hemin-G), onto a DNA tetrahedral nanostructure in such a manner as to cause them to interact, modulating their catalytic activity. We achieve allosteric regulation of these catalysts by incorporating dynamically responsive oligonucleotides that respond to specific "effector" molecules (complementary oligonucleotides or small molecules), altering the spacing between the catalytic sites and thus regulating their activity. This designable approach thus enables subtle allosteric modulation in DNAzymes that is potentially of use for nanomedicine and nanomachines

Synthesis and magnetic properties of CoPt–poly(methylmethacrylate) nanostructured composite material

We have prepared nanometer-sized CoPt particles dispersed in a poly~methyl methacrylate~PMMA!matrix, as a novel nanostructured magnetic plastic, through a soft chemical processing route. In this work, CoPt nanoparticles were successfully synthesized from a solution phase reduction system in the presence of capping ligands and stabilizing agents at high temperature. The CoPt nanoparticles were annealed at 400 °C for 3 h, and were subsequently re-dispersed inmethylmethacrylate~monomer! . The polymerization was induced by a UV source and the hardness of final product was adjusted by varying the amount of monomeric cross-link agent. Annealed bare CoPt nanoparticles as a ‘‘core’’ material and CoPt–PMMA composite material were characterized by using energy dispersive spectroscopy, transmission electron microscopy, and x-ray diffraction, indicating that we are able to prepare CoPt nanoparticles with 10 nm in diameter ~after annealing by employing this high temperature colloidal processing method. Magnetic investigation of this CoPt–PMMA material indicates an intrinsic coercivity of 300 Oe at 300 K and 1665 Oe at 5 K

Synthesis and magnetic properties of CoPt–poly(methylmethacrylate) nanostructured composite material

We have prepared nanometer-sized CoPt particles dispersed in a poly~methyl methacrylate~PMMA!matrix, as a novel nanostructured magnetic plastic, through a soft chemical processing route. In this work, CoPt nanoparticles were successfully synthesized from a solution phase reduction system in the presence of capping ligands and stabilizing agents at high temperature. The CoPt nanoparticles were annealed at 400 °C for 3 h, and were subsequently re-dispersed inmethylmethacrylate~monomer! . The polymerization was induced by a UV source and the hardness of final product was adjusted by varying the amount of monomeric cross-link agent. Annealed bare CoPt nanoparticles as a ‘‘core’’ material and CoPt–PMMA composite material were characterized by using energy dispersive spectroscopy, transmission electron microscopy, and x-ray diffraction, indicating that we are able to prepare CoPt nanoparticles with 10 nm in diameter ~after annealing by employing this high temperature colloidal processing method. Magnetic investigation of this CoPt–PMMA material indicates an intrinsic coercivity of 300 Oe at 300 K and 1665 Oe at 5 K

Mechanisms by which sialylated milk oligosaccharides impact bone biology in a gnotobiotic mouse model of infant undernutrition

Undernutrition in children is a pressing global health problem, manifested in part by impaired linear growth (stunting). Current nutritional interventions have been largely ineffective in overcoming stunting, emphasizing the need to obtain better understanding of its underlying causes. Treating Bangladeshi children with severe acute malnutrition with therapeutic foods reduced plasma levels of a biomarker of osteoclastic activity without affecting biomarkers of osteoblastic activity or improving their severe stunting. To characterize interactions among the gut microbiota, human milk oligosaccharides (HMOs), and osteoclast and osteoblast biology, young germ-free mice were colonized with cultured bacterial strains from a 6-mo-old stunted infant and fed a diet mimicking that consumed by the donor population. Adding purified bovine sialylated milk oligosaccharides (S-BMO) with structures similar to those in human milk to this diet increased femoral trabecular bone volume and cortical thickness, reduced osteoclasts and their bone marrow progenitors, and altered regulators of osteoclastogenesis and mediators of Th2 responses. Comparisons of germ-free and colonized mice revealed S-BMO-dependent and microbiota-dependent increases in cecal levels of succinate, increased numbers of small intestinal tuft cells, and evidence for activation of a succinate-induced tuft cell signaling pathway linked to Th2 immune responses. A prominent fucosylated HMO, 2'-fucosyllactose, failed to elicit these changes in bone biology, highlighting the structural specificity of the S-BMO effects. These results underscore the need to further characterize the balance between, and determinants of, osteoclastic and osteoblastic activity in stunted infants/children, and suggest that certain milk oligosaccharides may have therapeutic utility in this setting

Self-assembly of FePt nanoparticles into nanorings

The application of nanoparticles as quantum dots in nanoelectronics demands their arrangement in ordered arrays. Shape controlled self-assembly is a challenge due to the difficulties of obtaining proper self-assembling parameters, such as solvent concentration, organic ligands, and nanoparticle size. In this article, hard magnetic FePt nanoparticles were synthesized using a combination approach of reduction and thermal decomposition. The nanoparticles are about 4.5 nm and appeared as truncated octahedral enclosed by the {100} and {111} crystal facets of fcc structure. The nanoparticles are of hexagonal close packing and orient randomly in the self-assembly nanoarrays. By diluting the solution for large-area self-assembly, monolayer, submonolayer, and multilayer nanorings of FePt nanoparticles were formed. The nanoring formation is determined by hydrodynamics, surface effects, and interaction between the FePt nanoparticles and substrates

Photoinduced electrooptics in the In2O3 nanocrystals incorporated into PMMA matrixes

We have observed an appearance of clear morphological structure in composites containing In2O3 nanocrystals (NCs) incorporated into polymethyl methacrylite (PMMA) matrices under optical treatment by a polarized femtosecond laser. The initial photoinduced treatment was carried out using a Ti:sapphire femtosecond laser emitting 140 fs p-polarized light at a maximum spectral wavelength 775 nm with pulse repetition 1 kHz. It was found that the average morphological radius is varied maximally only during illumination at liquid helium temperature (T = 4.2 K). The morphological average mean radius is strictly dependent on the sizes of incorporated In2O3 NCs. Afterwards we measured the linear electrooptic effect at cw He–Ne laser wavelength 633 nm during simultaneous treatment by 1060 and 530 nm coherent beams of a Nd–YAG picosecond laser. We have established that a decrease of the average morphological mean radius favours an increase of the optically poled linear electrooptic coefficient. The diameters of In2O3 NCs were evaluated using transmission electron microscopy (TEM) and light-scattering techniques, whereas the NC sizes and morphological average mean radius of formed nanocomposites were estimated by atomic force microscopy (AFM). A relationship between the diameter of the NC, composite morphological mean average radius and effective linear electrooptic coefficient was established.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/58122/2/cm7_1_016204.pd

Self-assembly PbSe Nanoparticles into Nanorings

ABSTRACT In this presentation, we report the self-assembly of monolayer and multilayer nanorings of PbSe nanoparticles. PbSe nanoparticles were synthesized by using a high temperature precipitation method. The nanoparticles are about 5 nm and appeared as truncated octahedral enclosed by the {100} and {111} crystal facets of fcc structure. The large area monodisperse self-assembly nanoarrays were obtained by dropping the high concentration solution of PbSe nanoparticles on the carbon grid. The nanoparticles are hexagonal close packed and oriented randomly in the nanoarrays. By diluting the solution for large area self-assembly, self-assembly of monolayer and multilayer nanorings can be achieved. The nanoring formation is determined by hydrodynamics, surface effects, and interaction between the nanoparticles and carbon grid

Effects of microbiota-directed foods in gnotobiotic animals and undernourished children

To examine the contributions of impaired gut microbial community development to childhood undernutrition, we combined metabolomic and proteomic analyses of plasma samples with metagenomic analyses of fecal samples to characterize the biological state of Bangladeshi children with severe acute malnutrition (SAM) as they transitioned, after standard treatment, to moderate acute malnutrition (MAM) with persistent microbiota immaturity. Host and microbial effects of microbiota-directed complementary food (MDCF) prototypes targeting weaning-phase bacterial taxa underrepresented in SAM and MAM microbiota were characterized in gnotobiotic mice and gnotobiotic piglets colonized with age- and growth-discriminatory bacteria. A randomized, double-blind controlled feeding study identified a lead MDCF that changes the abundances of targeted bacteria and increases plasma biomarkers and mediators of growth, bone formation, neurodevelopment, and immune function in children with MAM

From differentiating metabolites to biomarkers

The current developments in metabolomics and metabolic profiling technologies have led to the discovery of several new metabolic biomarkers. Finding metabolites present in significantly different levels between sample sets, however, does not necessarily make these metabolites useful biomarkers. The route to valid and applicable biomarkers (biomarker qualification) is long and demands a significant amount of work. In this overview, we critically discuss the current state-of-the-art of metabolic biomarker discovery, with highlights and shortcomings, and suggest a pathway to clinical usefulness