Genotyping of grapevine and rootstock cultivars using microsatellite markers

Sixty-six grapevine and rootstock cultivars from an Austrian germplasm collection were genotyped using the following 10 microsatellite loci: VVS1, VVS2, VVS3, VVS4 (THOMAS and SCOTT 1993), VVS29 (THOMAS, pers. comm.), VVMD5, VVMD7 (BOWERS et al. 1996), VVMD28, VVMD32 and VVMD36 (BOWERS and MEREDITH, pers, comm.). All cultivars except those which are thought to be closely related (e.g. Portugieser blau and Portugieser grun) provided unique allelic profiles. A phenogram based on pairwise similarity values revealed the separation of rootstock cultivars from the Vitis vinifera varieties. The probability for the presence of null alleles was estimated from heterozygote deficiencies and null alleles were statistically excluded at 9 of the 10 loci. In order to demonstrate the distinctive power of the microsatellite markers investigated, gene diversity (GD) values were calculated. For both grapevine and rootstock cultivars we estimated a GD range from 0.70 to 0.91, while GD values for grapevines only range from 0.52 to 0.87 and values for rootstocks from 0.29 to 0.86

Application of microsatellite markers to parentage studies in grapevine

The use of microsatellites in genetic analysis does not only allow differentiation but also identification and parentage analysis of grapevine cultivars. Many of the cultivars which are of great economic importance, like Cabernet Sauvignon, have been selected and propagated centuries ago and often lack reliable documentation about their origins. In our study, 51 grapevine cultivars were genotyped at 24 microsatellite loci and searched for possible parent-offspring combinations. Our data confirm the origin of Cabernet Sauvignon from a cross between Cabernet franc and Sauvignon blanc. Furthermore we proved the parentage of the cultivars Neuburger (Silvaner x Veltliner rot), Blauburger (Portugieser blau x Blaufränkisch), Zweigelt (Blaufränkisch x St. Laurent) and Müller-Thurgau (Rheinriesling x Chasselas de Courtillier) at 24 SSR loci

Genetic analysis of grape berries and raisins using microsatellite markers

Microsatellite markers have been used recently for the identification and pedigree analysis of grapevines with leaves and wood as sources of vine DNA. To identify grapes after harvest and their products, we applied DNA extraction protocols to grape berries and raisins. DNA was obtained from both sources, but that of raisins was highly degraded. The suitability of DNA for PCR amplification of single genetic loci was shown by amplification of 11 microsatellite markers. 18 commercially available table grape samples were genotyped, and 11 (61 %) matched the corresponding genetic profile in our reference database. Four samples were shown to be defined incorrectly and 4 samples did not match any of the generic profiles present in the database. The investigated raisins were found to be cv. Sultanina. The results demonstrate that DNA-based cultivar identification methods can be applied to harvested grapes and raisins