3 research outputs found

    Phylogenetic tree of NoV capsid gene sequences.

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    <p>Phylogenetic tree based on 11 nucleotide sequences of 1140 nt of the NoV capsid gene. All sequences are indicated by their GenBank Accession number. GenBank accession numbers used in this manuscript are from norovirus sequences from patient samples (KF798196, KF798197, KF798198 and KF798200) and water samples (KF798199 (W3) and KF798201 (W1)). The remaining norovirus sequences from patient samples used in the phylogenetic tree have been published previously <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0105053#pone.0105053-Fonager1" target="_blank">[32]</a>. Legend: Circles and triangles: New Orleans 2009 variants and Squares: Sydney 2012 variants, Circles: belonging to the outbreak, Triangles: not belonging to the outbreak described here. Open triangle and square are the reference sequences for the New Orleans 2009 and Sydney 2012 variants respectively. Open circles:sequences obtained from water samples (KF798201,W1) and KF798199,W3) and closed circles are the sequences obtained from patient stool samples.</p

    Results of positive microbiological findings in water samples.

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    a<p>Estimations are figured with or without applying corrective factors derived by extraction efficiencies.</p>b<p>Below theoretical limit of quantification estimated at 100 genomic units/200 ml.</p><p>Results of positive microbiological findings in water samples.</p
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