Biodata Resource Inventory Dataset

<p>final_inventory_2022.csv is the result of the Biodata Resource Inventory conducted in 2022. data_dictionary.csv provides an explanation of the columns in the inventory file.</p&gt

Rheological Properties of Wheat–Flaxseed Composite Flours Assessed by Mixolab and Their Relation to Quality Features

The effect of adding brown and golden flaxseed variety flours (5%, 10%, 15% and 20% w/w) to wheat flours of different quality for bread-making on Mixolab dough rheological properties and bread quality was studied. The flaxseed–wheat composite flour parameters determined such as fat, protein (PR), ash and carbohydrates (CHS) increased by increasing the level of flaxseed whereas the moisture content (MC) decreased. The Falling Number values (FN) determined for the wheat–flaxseed composite flours increased by increasing the level of flaxseed. Within Mixolab data, greater differences were attributed to the eight parameters analysed: water absorption, dough development time, dough stability and all Mixolab torques during the heating and cooling stages. Also, a general decreased was also recorded for the differences between Mixolab torques which measures the starching speed (C3-2), the enzymatic degradation speed (C4-3) and the starch retrogradation rate (C5-4), whereas the difference which measures the speed of protein weakening due to heat (C1-2) increased. Composite dough behaviour presented a close positive relationship between MC and DT, and FN and PR with the C1-2 at a level of p < 0.05. The bread physical and sensory quality was improved up to a level of 10–15% flaxseed flour addition in wheat flour

A large dataset of software mentions in the biomedical literature

<p>We describe the CZ Software Mentions, a new dataset of software mentions in biomedical papers. Plain-text mentions are extracted with a trained SciBERT model from several sources: the NIH PubMed Central collection and papers provided by various publishers to the Chan Zuckerberg Initiative. The dataset provides sources, context and metadata, and, for a number of mentions, the disambiguated software entities and links. We extract 1.12 million unique string software mentions from 2.4 million papers in the NIH PMC-OA Commercial subset, 481k unique mentions from the NIH PMC-OA Non-Commercial subset and 934k unique mentions from 3 million papers in the Publishers' collection. We propose a clustering-based disambiguation algorithm to map plain-text software mentions into distinct software entities and apply it on the NIH PubMed Central Commercial collection. Through this methodology, we disambiguate 1.12 million unique strings into 97600 unique software entities, covering 78% of all software-paper links. We link 185,000 of the mentions to repositories, covering about 55% of all software-paper links. We describe in detail the process of building the datasets, disambiguating and linking the software mentions. We make all data and code publicly available to help assess the impact of software (in particular scientific open source projects) on science.</p&gt

Quality and Yield of Edible Vegetables from Landscape Design

This study evaluated the effects of raised beds on crop production and quality in home gardens. The crops were grown using optimal management techniques and crop rotation principles based on organic farming. Three experimental versions were compared: V1 with 40-centimetre-high raised beds, V2 with 20-centimetre-high raised beds, and V3 with ground-level beds as the control. The results showed consistent dry weight and moisture content across all three versions for most vegetable varieties. The sweet pepper ‘Barbara’ stood out significantly, as V3 had the highest dry weight percentage (10.28%) and V2 had the highest moisture content percentage (93.40%). Nutrient analysis revealed no significant differences in lipid, ash, protein, nitrogen, or caloric value among the different versions of most vegetables. However, version V3 of the tomato ‘Tigerella’ showed the highest crude fibre content. Variations were observed in lycopene, ß-carotene, and calcium content among different versions of specific vegetables. Anti-nutritive compounds and average yield varied among the experimental versions for certain plant species. These findings have implications for dietary choices and can guide sustainable food production. It is recommended to consider raised beds, particularly V3, for cultivating sweet pepper ‘Barbara’, and further research is encouraged to explore the potential health benefits of version V3 of tomato ‘Tigerella’. These insights provide valuable vegetable science and nutrition information and can guide agricultural practices

Biodata Resource Inventory Supplemental Materials

<p>This is a preprint version of the supplemental materials associated with the manuscript titled A Machine Learning-Enabled Open Biodata Resource Inventory from the Scientific Literature by Imker et al. 2023.</p&gt