Numbers of Haplotypes of the 48 CNVs.

<p>Numbers of Haplotypes of the 48 CNVs.</p

Comparison between data from microarray and gel electrophoresis.

<p>Meanings of the x- and y-axes in all scatter plots are the same as those in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0005236#pone-0005236-g002" target="_blank">Figure 2</a>.</p

Correlation between genotypes of the donors and their sperm samples for CNV Rs879886.

<p>Meanings of the graphics are the same as those in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0005236#pone-0005236-g002" target="_blank">Figure 2</a>.</p

Correlation between genotypes of the donors and their sperm samples for CNV Rs2287968.

<p>Meanings of the graphics are the same as those in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0005236#pone-0005236-g002" target="_blank">Figure 2</a>.</p

Correlation between genotypes of the donors and their sperm samples for SNP Rs589670 and CNV Rs2960392.

<p>Donor genotypes were determined using the corresponding semen samples. For all scatter plots: x-axis, the sum of the signal intensities/1,000 of the two colors, y-axis, Ln(R)s. Allelic variants of the SNP are diagrammed as light grey and black strips in the sperm heads, and CNV paralogous variants are indicated as white and darker grey strips.</p

dbSNP access numbers of 65 markers and classification by Fredman <i>et al.</i>[28].

<p>dbSNP access numbers of 65 markers and classification by Fredman <i>et al.</i><a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0005236#pone.0005236-Fredman1" target="_blank">[28]</a>.</p

Schematic illustration of genotypes, haplotypes, and paralogous variants.

<p>Cells with three different genotypes comprised of two haplotypes are shown. The top and bottom cells are homozygous for either the longer or shorter haplotype, while the cell in the middle has both. Each haplotype has two paralogous variants that are distinguished by grey and white colors, and discriminated by analyzing a single-base substitution experimentally. Each variant may have zero to multiple copies.</p