Additional file 3: of Dynamic modulation of phosphoprotein expression in ovarian cancer xenograft models

Differential protein expression. Log fold changes of differentially expressed proteins over 14 days are shown in 4 worksheets, each for a xenograft-treatment condition: carboplatin treated OV1002; carboplatin treated HOX424; carboplatin-paclitaxel treated OV1002; carboplatin-paclitaxel treated HOX424. (XLS 57 kb

Unsupervised hierarchical clustering for the 47 candidate genes annotated according to response to therapy.

<p>Unsupervised hierarchical clustering for the 47 candidate genes annotated according to response to therapy.</p

Spearman’s correlation network using Bonferroni Correction (p = 0.05) and circular network layout (http://www.tmanavigator.org/).

<p>Abbreviations: N—nucleus, C—cytoplasm.</p

Karyogram for chromosome 1 to 22 showing the most frequent gains and losses for the 15 CRC cell lines

<p>Karyogram for chromosome 1 to 22 showing the most frequent gains and losses for the 15 CRC cell lines</p

Hierarchical clustering using the genomic segmentations of the 15 CRC cell lines.

<p>Hierarchical clustering using the genomic segmentations of the 15 CRC cell lines.</p

Unsupervised hierarchical clustering of RPPA protein expression data using Euclidian distance with average linkage.

<p>Unsupervised hierarchical clustering of RPPA protein expression data using Euclidian distance with average linkage.</p

Venn diagram showing differentially expressed genes with respect to treatment response to a) 5-FU, b) L-OHP, and c) BEZ235B.

<p>Venn diagram showing differentially expressed genes with respect to treatment response to a) 5-FU, b) L-OHP, and c) BEZ235B.</p