Heatmap of the genes in the module regulated by <i>SPAG5</i> in MBC.

<p>Red corresponds to up-regulation and green to down-regulation. The 66 MBC tumors are sorted according to their gene expression level of <i>SPAG5</i>.</p

RNA quality in frozen breast cancer samples and the influence on gene expression analysis – a comparison of three evaluation methods using microcapillary electrophoresis traces-3

<p><b>Copyright information:</b></p><p>Taken from "RNA quality in frozen breast cancer samples and the influence on gene expression analysis – a comparison of three evaluation methods using microcapillary electrophoresis traces"</p><p>http://www.biomedcentral.com/1471-2199/8/38</p><p>BMC Molecular Biology 2007;8():38-38.</p><p>Published online 22 May 2007</p><p>PMCID:PMC1891312.</p><p></p>s of the samples for the different time periods at room temperature, were related to the gene expression levels of the samples left 50 seconds at room temperature. If the correlation coefficient of the gene expression level is the true value, two samples obtain unexpected RIN values, . a low correlation coefficient and a RIN value above the cut-off or (arrows, RIN 5 = Sample 5, 10 min and RIN 6 = Sample 3, 30 min)

RNA quality in frozen breast cancer samples and the influence on gene expression analysis – a comparison of three evaluation methods using microcapillary electrophoresis traces-2

<p><b>Copyright information:</b></p><p>Taken from "RNA quality in frozen breast cancer samples and the influence on gene expression analysis – a comparison of three evaluation methods using microcapillary electrophoresis traces"</p><p>http://www.biomedcentral.com/1471-2199/8/38</p><p>BMC Molecular Biology 2007;8():38-38.</p><p>Published online 22 May 2007</p><p>PMCID:PMC1891312.</p><p></p>, neuron and testis specific protein, = transcription elongation factor A, = myosin regulatory light chain, = kinesin-associated protein 3, = guanine nucleotide binding protein, and = chromosome 6 open reading frame 89. Filled circles represent outliers

The 10 most significantly enriched biological processes in the malignant ovarian tumors in the study cohort [31].

<p>*FDR<0.05 and ≥3 recognized genes/biological function were required to consider a gene ontology (GO) process significant. 731 significant.</p><p>GO processes were identified.</p>a<p>Number of genes in the study cohort correlating to the GO process.</p>b<p>Number of genes in the GO process.</p><p>The 10 most significantly enriched biological processes in the malignant ovarian tumors in the study cohort <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0107643#pone.0107643-Chen1" target="_blank">[31]</a>.</p

Ovarian cancer subtypes.

<p>Serous ovarian tumors in the study cohort with corresponding ovarian cancer subtypes (“C-signatures”) <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0107643#pone.0107643-Tothill1" target="_blank">[18]</a>. The rows outline the tumor types with the representation in each subtype in percent within parentheses. The p-value is calculated using Fisher's exact test.</p><p>Ovarian cancer subtypes.</p